Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0106 ATGGCGTTGTCAGAGAAGAAACTGTCGAATCCTATGAGGGAAATCAAAGTGCAAAAACTTGTCCTCAACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCTGCAAAGGTTCTTGAACAGCTAAGTGGCCAAACTCCTGTTTTCTCCAAAGCTAGGTACACCGTCCGTTCCTTTGGTATTAGAAGGAATGAAAAGATTGCATGCTACGTCACTGTTAGAGGCGACAAGGCAATGCAGCTTTTGGAGAGTGGCTTGAAGGTCAAGGAATATGAGCTGTTGAGGAGAAACTTCAGTGATACCGGGTGTTTTGGCTTCGGTATTCAGGAACATATTGATTTGGGAATCAAGTATGATCCTTCCACTGGTATTTATGGAATGGATTTTTTTGTTGTCTTGGAGCGCCCTGGTTATCGTGTTGGACGTCGTCGTAGGTGCAAGGCAAGAGTTGGAATCCAGCATCGTGTCACAAAGGATGATGCCATGAAGTGGTTCCAAGTTAAATATGAAGGTGTGATCCTAAACAAGTCCCAGGCAATTGTTTAG 549 0.4463 MALSEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAIV* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0106 182 PANTHER 60S RIBOSOMAL PROTEIN L11-1 4 181 - -
Mtr3g0106 182 Pfam ribosomal L5P family C-terminus 67 165 IPR031309 -
Mtr3g0106 182 SUPERFAMILY RL5-like 9 174 IPR022803 -
Mtr3g0106 182 ProSitePatterns Ribosomal protein L5 signature. 40 56 IPR020929 GO:0003735|GO:0005840|GO:0006412
Mtr3g0106 182 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 4 181 IPR002132 GO:0003735|GO:0005840|GO:0006412
Mtr3g0106 182 Pfam Ribosomal protein L5 10 63 IPR031310 -
Mtr3g0106 182 Gene3D - 1 178 IPR022803 -
Mtr3g0106 182 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 173 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0106 Mtr-Chr3 1173844 1177033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0106 4 182 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 96.089 1.22e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0106 K02868 - fve:101302044 337.035