Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0105 ATGTCTGTTCTTGTTCGAACAATTCAAAGAGCTCATAATGTTCTCTCTCAAACATTAGGTTTTAGTAACACCAGCAGTTACATTGCTGAATCAGTTACCAAATCACCCTTTGAATCCAACATTTTGCGAATTATCCGAAACGAAATGGAGTTTCTAGCTGATATCGCTCCTCCACACCAGGCTTACGAGAAGAAACTGTTGAATAATCCATTGAGGGATATCAAAGTGCAAAAGCTTGTACTCAACATCTCCGTTGGTGGTGAAAGTAGACATCGTCTCACCAGAGCCGCCATGGTTCTTCACCACCTTAGCGGTCAAACCCCTGTTCTCTCTAAAGCTAAGCACACCGTCCGTTCCTTTGGTAATAGAAGGAATGAAAAGATTTCTTGCTACGTCACTGTTAGAGGCGACAAGGCAATGCAGCTTTTGGAGAGCAGTTTGAAGGTCAAGGAATATAAACTGTTGAGCAGAAATTTCAGTGATACCGGTTGTTTTTGCTTCAGTATTCAGGATCATATTGAATTGGGATTCAAATATGATCCTTCTATTGGTATTTATGGAATGAATTTCTTTGTTGTCTTGGAGCGCCCTGGTAATCGTGTGGGACGTCGTCCCCGTGGCAAGGCACGTCTTGGAATCCAGCATCGTGTCACAAAGGATGATGCCATGAAGTGGTTCCAGGGTAAATATGAAGGTGTGATCCTAAACAGGCCCGAGCTCATTTAG 726 0.4298 MSVLVRTIQRAHNVLSQTLGFSNTSSYIAESVTKSPFESNILRIIRNEMEFLADIAPPHQAYEKKLLNNPLRDIKVQKLVLNISVGGESRHRLTRAAMVLHHLSGQTPVLSKAKHTVRSFGNRRNEKISCYVTVRGDKAMQLLESSLKVKEYKLLSRNFSDTGCFCFSIQDHIELGFKYDPSIGIYGMNFFVVLERPGNRVGRRPRGKARLGIQHRVTKDDAMKWFQGKYEGVILNRPELI* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0105 241 Gene3D - 61 238 IPR022803 -
Mtr3g0105 241 Pfam ribosomal L5P family C-terminus 127 225 IPR031309 -
Mtr3g0105 241 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 63 241 IPR002132 GO:0003735|GO:0005840|GO:0006412
Mtr3g0105 241 Pfam Ribosomal protein L5 69 123 IPR031310 -
Mtr3g0105 241 SUPERFAMILY RL5-like 69 234 IPR022803 -
Mtr3g0105 241 PANTHER 60S RIBOSOMAL PROTEIN L11-2 63 241 - -
Mtr3g0105 241 ProSitePatterns Ribosomal protein L5 signature. 100 116 IPR020929 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0105 Mtr-Chr3 1170475 1172878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0105 61 241 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 79.006 5.72e-100 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0105 K02868 - ini:109155933 271.166