Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0052 ATGAAGAAGCTCTCAGTTGGTGATGCATTATCGTTACTCGCAGCAGTAAAACGTAGGTTTGGATATGAGGAAAGGGAAAAGTATGGATCTTTTCTACAAATTATGAAGGATTTCAAGGCTGAAAGAATTGATGCTAGGGATGTCAAATTAAGAGTGTACGAGTTGTTGGACGGCCATGAAGATTTAATTTCGAAATTCAACATCTTCTTGCCAACTGAATATGAAATCAAACTTCCATTGGATCGTGACGACGATGATGATGAACTACAAGGTCATATGTTAGCGACAAAAGATGCATTTGCATTTCTCGAGAAAGTAAAAGATGTGTTTCATGGTAAGAATGAGGAAAAGTATAATGAGTTTTTAAAAATTGCTAAGGATTTCAAGGCTGGAAGAATTGATATAAGTGTTGCTGCGGCAAGAGGGAATGAGCTGCTTCAAGGGCATACGGATTTAATTTTGGGATTCAACGCCTTCTTGCCAAAGAAATATCGAATCACACCTCCAGTTCAGCTTGACACTGGTGAAGCAACGAATAACATACAAAATGGTTGTAAAATTTCTTGGGATATGCTTGATGTCATTTCCAGAGATCTAGATTTCGATGACCTCTTTCAATTCGCTGGTGTGTGCAAGAATTGGAGGGAATTTCATAAAACTTATTGGAAAAAGTTCTTGGCATTCCAAGAACCATTGATTATTCAAAAGTCTTCCCATGATAAGAAATCCTTTTCCTTCATCAGCATAGCTGACCGAAAAGTTTATCACTCGAAGACGATTAATCAATTCTGGCACTTTGCCTATACTGGCTGTTCTAGCGGATATTTGATCTTGACAAGGGACACTAATTCTTTTCTGCTATTGAATCCATTTACAAGAAGAAAGAAGGTAATCAATACATCAACCTTTAAAGTCAATTGTTCTTATTTTGCTTACCATGTCTTACTTGCTTTCGGCAAAGGCTCGGAGGAATTTGTGTTCGTCGCTTCATGTAAAAGTTCTGGCAGTTTGTATGTCTATCAGTCTCGAAATTTGGGTTGGGTTACATATTCAACAATGGAAAGTCCATCGAAGGTTGTTGACTTTGTTGTTTTGCATCATACTATATACGTTGTCACTGACAAGGCCAACATAGGTGTACTTGACTTGAATTCCACAAATAAATTTTTTTTAGAACTGAAGAGTACACCCGATGTAACATCTACCTCACTCCTCAGGATGGTTAGTTGTGATGGACAACTTTTAGTGATTCATATTGCTTCCCAGGAAATATTGAATGTATACAAGATAGACTTCTCAACCATGAATTATATCAAGCTGGAAACTTTGGGTGACATTGCATTATTTTATAATTCCGGGGAACACTTCTATGCATTGAGCAACCCAAAAAGGTGGGATTTTGAAAGCAACTCTTTGTATGCCATCAATCTTTCATCCACAACATGTAAAGTGTGTTTAGGGGATGATAACGAACTGCCAAAATACATTAAGCATGATAGATTTCGAGTTCCTCCGAAGGAAAATGCCTACTTGTTGGATTGGTGTTTTAGACATCTACACTATGAGGTGGATCTTTCTCCAGTTGTGTAA 1590 0.3748 MKKLSVGDALSLLAAVKRRFGYEEREKYGSFLQIMKDFKAERIDARDVKLRVYELLDGHEDLISKFNIFLPTEYEIKLPLDRDDDDDELQGHMLATKDAFAFLEKVKDVFHGKNEEKYNEFLKIAKDFKAGRIDISVAAARGNELLQGHTDLILGFNAFLPKKYRITPPVQLDTGEATNNIQNGCKISWDMLDVISRDLDFDDLFQFAGVCKNWREFHKTYWKKFLAFQEPLIIQKSSHDKKSFSFISIADRKVYHSKTINQFWHFAYTGCSSGYLILTRDTNSFLLLNPFTRRKKVINTSTFKVNCSYFAYHVLLAFGKGSEEFVFVASCKSSGSLYVYQSRNLGWVTYSTMESPSKVVDFVVLHHTIYVVTDKANIGVLDLNSTNKFFLELKSTPDVTSTSLLRMVSCDGQLLVIHIASQEILNVYKIDFSTMNYIKLETLGDIALFYNSGEHFYALSNPKRWDFESNSLYAINLSSTTCKVCLGDDNELPKYIKHDRFRVPPKENAYLLDWCFRHLHYEVDLSPVV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0052 529 PANTHER OS06G0113600 PROTEIN 181 524 - -
Mtr3g0052 529 Gene3D Paired amphipathic helix 98 161 IPR036600 GO:0006355
Mtr3g0052 529 Gene3D Paired amphipathic helix 8 71 IPR036600 GO:0006355
Mtr3g0052 529 SUPERFAMILY PAH2 domain 95 164 IPR036600 GO:0006355
Mtr3g0052 529 PANTHER OS06G0113600 PROTEIN 181 524 - -
Mtr3g0052 529 SUPERFAMILY PAH2 domain 3 74 IPR036600 GO:0006355
Mtr3g0052 529 Pfam Paired amphipathic helix repeat 116 160 IPR003822 GO:0006355
Mtr3g0052 529 Pfam Paired amphipathic helix repeat 26 70 IPR003822 GO:0006355
Mtr3g0052 529 ProSiteProfiles PAH domain profile. 2 73 IPR003822 GO:0006355
Mtr3g0052 529 ProSiteProfiles PAH domain profile. 92 163 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0052 Mtr-Chr3 592042 595371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0052 1 84 WRKY Transcription Factor Family AT4G12020 41.667 1.67e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g0052 PAH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0052 - K11644 cam:101488742 692.575