Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0050 ATGAAGAAGCTCTCTGTTGGTGATGCATTATCGTTACTCGCAGCAGTAAAACGTAGGTTTGGATATGAGAAAAGGGAAAAATATGGATCTTTTCTACAAATTATGAAGGATTTCAAGGCTGAAAGAATTGATGCTAGGGATGTCAAATTAAGAGTGTACGAGTTGTTGGACGGCCATGAAGATTTAATTTCGAAATTCAACATCTTCTTGCCAGCTGAATATGAAATCAAACTTCCATTAGACCGTGACGACGACCATGTTGATCAACAAGAAGGTCGTATGTTAGAGACAAAAGATGCATCAGCATTTCTCGAGAAAGTAAAAGATATGTTTGATGGTAAGAATGAGGAAAAGTATCATGAGTTTTTAGAAATTGTTAAGGATTTCAAGATTGGAAGAATTGATATAAGTGTTACCGCGGCAAGAGGGAATGAGCTGTTTCAAGGGCATACCGATTTAATTTTGGGATTCAATGCCTTCTTGGCAAAGAAATATCGAATCACACCTCTAGTTCAGCTTGACACCGAGGAAGCAATGAATAACATAGAAGATGGTTGTCAAATTTCTTGGGATATACTTGATGTCATTTCCAGAGATCTAGATTTCGATGACCTCTTTCAATTCGCTGGTGTGTGCAAGAATTGGAGGGAATTTCAAAAAACTTATTGGAAAAAGTTTTTGGCATCACCAGAACCATTACTTATTCAAAAGTCTTCCCATGATAAGAAATCATTTTCCTTCATCAGCATAGCTGACCGAAAAGTTTATCACTCCAAGACGATCAATCAATTCTGGCAGGTTGCTTATTCTGGCTGTTCTAGCGGATATTTGATCATGACAGGGGACAATAATTCTTTTCTGCTATTGAATCCATTTACAAGAAGAAAGAAGGTAATCAATACATCAACCTTTAAAGTCAATTCTTCTTATTTAGCTTACCATGTGTTACTTGCTTTTGGCAAAGGCATGGAGAAATTTGTCTTAGTCGCTTCATGTAAAAGATCTGGCAGTTTGTATGTCTATCAGTCTCGAAATTTGGGTTGGGTTACATATTCAACAATGGAAAGTCCATGGAAGGTTGTTGACTTTGTTGTTTTGCATCATACTATATACGTTGTCACTGACAAGGCCAACATAGGTGTACTTGACTTGAATTCCACAAATATAAAATATTTAGAACTGAAGAGTACACCCGATGTAACATCTACTTCACTCCTCAGGATGGTTAGTTGTGATGGACAACTTTTAGTGATTCATATTGCTTCCGAGGAAATATTGAATGTATACAAGATAGACTTCTCAACCATGAATTATATCAAGCTGGAAACTTTGGGTGACATTGCATTATTTTATGCTTCCGGGGAATACTTCAATGCGTTGAGCAACCCGAGAAGGTGGGGTTTTGAAAGCAACTCTTTGTATGCCATCAATCTTTCATCCACAACATGTAAAGTGTGTTTAGGGGATGATAACAAACTGCCAAAATACATTAAGCATGATAGATTTCGAGTTCCTCCAAAGGAAAATGCCTACTTGCTGGATTGGTGCTTTAAACATCAACAATATGAGGTGGATTATTCTCTAGATGAGTAA 1593 0.3704 MKKLSVGDALSLLAAVKRRFGYEKREKYGSFLQIMKDFKAERIDARDVKLRVYELLDGHEDLISKFNIFLPAEYEIKLPLDRDDDHVDQQEGRMLETKDASAFLEKVKDMFDGKNEEKYHEFLEIVKDFKIGRIDISVTAARGNELFQGHTDLILGFNAFLAKKYRITPLVQLDTEEAMNNIEDGCQISWDILDVISRDLDFDDLFQFAGVCKNWREFQKTYWKKFLASPEPLLIQKSSHDKKSFSFISIADRKVYHSKTINQFWQVAYSGCSSGYLIMTGDNNSFLLLNPFTRRKKVINTSTFKVNSSYLAYHVLLAFGKGMEKFVLVASCKRSGSLYVYQSRNLGWVTYSTMESPWKVVDFVVLHHTIYVVTDKANIGVLDLNSTNIKYLELKSTPDVTSTSLLRMVSCDGQLLVIHIASEEILNVYKIDFSTMNYIKLETLGDIALFYASGEYFNALSNPRRWGFESNSLYAINLSSTTCKVCLGDDNKLPKYIKHDRFRVPPKENAYLLDWCFKHQQYEVDYSLDE* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0050 530 ProSiteProfiles PAH domain profile. 2 73 IPR003822 GO:0006355
Mtr3g0050 530 ProSiteProfiles PAH domain profile. 93 164 IPR003822 GO:0006355
Mtr3g0050 530 PANTHER OS06G0113600 PROTEIN 168 529 - -
Mtr3g0050 530 PANTHER OS06G0113600 PROTEIN 168 529 - -
Mtr3g0050 530 SUPERFAMILY PAH2 domain 3 74 IPR036600 GO:0006355
Mtr3g0050 530 Pfam Paired amphipathic helix repeat 117 161 IPR003822 GO:0006355
Mtr3g0050 530 Pfam Paired amphipathic helix repeat 26 70 IPR003822 GO:0006355
Mtr3g0050 530 SUPERFAMILY PAH2 domain 95 162 IPR036600 GO:0006355
Mtr3g0050 530 Gene3D Paired amphipathic helix 99 161 IPR036600 GO:0006355
Mtr3g0050 530 Gene3D Paired amphipathic helix 8 71 IPR036600 GO:0006355
Mtr3g0050 530 SUPERFAMILY Galactose oxidase, central domain 266 447 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0050 Mtr-Chr3 560002 563181 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0050 1 92 WRKY Transcription Factor Family AT4G12020 41.053 4.38e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g0050 PAH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0050 - K11644 cam:101488742 683.33