Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0048 ATGAAGAATCTCTCCCTTGGTGATGCATTAGGGTTATTCTCAGCATTAAAACGTAAGTTTGGATATGAGAAAGGGGGAAAATATGAATCTTTTCTACAAATTATGAAGGATTTCAAGGCTGAAACAATTGATGCTAGGGTTGTCAAATTAAGAGTGTACGAGTTGTTGGATGGCCATGAAGATTTAATTTTGAGATTCAACACCTTCTTGCCAGCTAAATATGAAATCAAACTTCCATTGGATCGTGATGATGATGATGAAGAACAAGATGGTCGAATGACAGAGACAAATATCGAAGTGCTAAAGAAATATCGAATCACACCTTCAGTTCAGCTGGACACTGGGGAAGCCATGAATAACATAGAAGATAATTGTCCATTTTCCTGGGATATGCTTGATGTCATTTCCAGAGATCTAGATTTCGATGACCTCTTTCAATTTTCTGGCGTGTGCAAGAATTGGAGGGAGTTTCATAAAACTTACTGGAAAAAGTTCTTGGCATCCCAAGAACCATTACTTATTAAAAAGTCTTACCATGATAAGAAATCCTTTTCCTTCATCAGCATAGCTGACCGAAAAGTTTATCACTCGAAGACGATCAATCAATTCTGGCACTTTGCCTATTTTGGCAGTTCTAGCGGATATTTGATCATGAGAGGGGACAACAATTCTTTTCTGCTATTAAATCCATTTACAAGAAGAAAGAAGGTAATCAATACATCAACCTTTAAAGTCAATTCTACTTATTTTGCTTACCATGTGTTACTTGCTTTTGGCAAAGGCTCGGAGGAATTTGTCTTAGTTGCTTCATGTAAAAGTTCTAGCAGTTTGTATGTCTATCAGTCTCGAAATTTGGGTTGGGTTACATATTTAACAATGGGAAATGCATGGAAGGTTGTTGACTTTGTTGTGTTTCATAATACTATATATGTTGTCACCAACGAGGCCATCATAGGTGTACTCGACTTGAATTCCTCAAATATAAAATTTTTAGAAATGAAGAGTATGCCCGATGTAACATCTATGTCACACCTAAGGTTGGTTTGTTGTGATGGACAACTTTTAGTGGTTCATATTGAGTCCGAGGAAATATTGAATGTTTACAAGATAGACTTCTCAACCATGAATTATGTCAAGCTGGAAACTTTGGGCGACATTGCCTTATTTTATGCTTCGGGGGAATACTTCTATGCATTGAACAACCCGAGGAGGTGGGGTTTTGAAAGCAACTCTTTGTATGCCATCAATCTTTCATCGACAACATGTAAAGTGTGTTTAGGGGATGATAACAGACTGCCAAAATACATTAAGCATGATAGAACTCGAGTTCCTCCAACGGAAAATGCCTACTTGCTGGATTGGTGCTTTAGACATCAACAATATGAGGTGGATTTTTCTCCAGATGAGTAA 1410 0.3738 MKNLSLGDALGLFSALKRKFGYEKGGKYESFLQIMKDFKAETIDARVVKLRVYELLDGHEDLILRFNTFLPAKYEIKLPLDRDDDDEEQDGRMTETNIEVLKKYRITPSVQLDTGEAMNNIEDNCPFSWDMLDVISRDLDFDDLFQFSGVCKNWREFHKTYWKKFLASQEPLLIKKSYHDKKSFSFISIADRKVYHSKTINQFWHFAYFGSSSGYLIMRGDNNSFLLLNPFTRRKKVINTSTFKVNSTYFAYHVLLAFGKGSEEFVLVASCKSSSSLYVYQSRNLGWVTYLTMGNAWKVVDFVVFHNTIYVVTNEAIIGVLDLNSSNIKFLEMKSMPDVTSMSHLRLVCCDGQLLVVHIESEEILNVYKIDFSTMNYVKLETLGDIALFYASGEYFYALNNPRRWGFESNSLYAINLSSTTCKVCLGDDNRLPKYIKHDRTRVPPTENAYLLDWCFRHQQYEVDFSPDE* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0048 469 Pfam Paired amphipathic helix repeat 27 70 IPR003822 GO:0006355
Mtr3g0048 469 ProSiteProfiles PAH domain profile. 2 73 IPR003822 GO:0006355
Mtr3g0048 469 PANTHER OS06G0113600 PROTEIN 105 466 - -
Mtr3g0048 469 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 185 425 IPR011044 -
Mtr3g0048 469 PANTHER OS06G0113600 PROTEIN 105 466 - -
Mtr3g0048 469 Gene3D Paired amphipathic helix 8 71 IPR036600 GO:0006355
Mtr3g0048 469 SUPERFAMILY PAH2 domain 3 74 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0048 Mtr-Chr3 505155 508497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0048 1 84 WRKY Transcription Factor Family AT4G12020 40.476 4.36e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g0048 PAH 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0048 - - cam:101488742 585.104