Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0038 ATGAATGAAGAAATCGAAAGCGGAGAAGGTCCACCAACAAACGATCTATGTTCAATCTGTCACGGAAACTTCCAACTCCCATGTCAAGCAAATTGTTCTCACTGGTTTTGCGCTAACTGCATAATCCAAGTTTGGCAGTATTCTTCTCCTCTTCAACCTTGCAAATGTCCTCTCTGTCGTCGTCCTATTAACCTTCTTGTTCCCACCGACGTCGTAGACGACGCCAATTCTGAGCAAGATCGTTTGAATTTGGCTGATATTCAAAGATATAACCGTGTTTTTGGCCAACAATCTAATGCTAGTATTGTTCAGAGATTACGTGATCTTCCTTTTCTTTTGAAAAGGCTTTTTAAGGATTTTGTTAACCCTAATACTTCTCTTCCTCTTGTTATTAGAGCTCGTGTTTTCATTACGATGCTACTAAGTATTATATACATCTTCAGCCCTATTGACATCATTCCAGAAGGGATGTTGGGAATAATTGGTCTTTTGGATGATGTCCTAATTGCTCTAATCTTTTTCCTACATGTTGCTGCACTCTATAGATCTGTACTTTACCTCCGACATGGGGGTTCGTGA 579 0.399 MNEEIESGEGPPTNDLCSICHGNFQLPCQANCSHWFCANCIIQVWQYSSPLQPCKCPLCRRPINLLVPTDVVDDANSEQDRLNLADIQRYNRVFGQQSNASIVQRLRDLPFLLKRLFKDFVNPNTSLPLVIRARVFITMLLSIIYIFSPIDIIPEGMLGIIGLLDDVLIALIFFLHVAALYRSVLYLRHGGS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0038 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 104 IPR013083 -
Mtr3g0038 192 SMART ring_2 17 59 IPR001841 -
Mtr3g0038 192 PANTHER UNCHARACTERIZED 12 192 IPR038896 GO:0061630
Mtr3g0038 192 PANTHER BNAC07G13660D PROTEIN 12 192 - -
Mtr3g0038 192 SUPERFAMILY RING/U-box 14 66 - -
Mtr3g0038 192 Pfam Protein of unknown function (DUF1232) 138 171 IPR010652 -
Mtr3g0038 192 Pfam Zinc finger, C3HC4 type (RING finger) 14 64 - -
Mtr3g0038 192 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Mtr3g0038 192 ProSiteProfiles Zinc finger RING-type profile. 17 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0038 Mtr-Chr3 407431 410242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0038 44 192 C3H Transcription Factor Family AT1G72175 63.333 3.08e-53 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0038 K15707 - csin:114262088 268.085