Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0037 ATGGATGTAGAGCATCACAGCAGCGGCGAAGGTCCAGCAACGAACGATCGATGTTCAATCTGTCACGAAAACTTCCAACTCCCATGTCAAGCAAATTGTTCTCACTGGTTTTGTGCAAACTGTATTATCCAAGTTTGGCAATATTCTTCTCCTCTTCAACCTTGCAAATGTCCTCTTTGTCGTCGTCCTATTAATCTTCTTCTTCCCACTGACGTTGTCGACAACAACAATTATGAGCAGGATAGTCTTCTGGGTGATATTCAGAAATATAATCGTCTTTTTGGTGAACAATCTAATGCTAGTATTGCTGAGAGATTACGTGATCTTCCGTTTCTTTTAAGAAGGCTTTTTAGGGATTTTGCTAACCCTAATGTGTCTTTTCCTCTTGTTATCAGAGCTCGTATTTTTGTTACAGTAGTTGTGAATCGTGTCGGATTGGAGATCATTAGTCGGAATGTTGGAGGTGACTTCGAACCGTTGTTCCTATGA 489 0.407 MDVEHHSSGEGPATNDRCSICHENFQLPCQANCSHWFCANCIIQVWQYSSPLQPCKCPLCRRPINLLLPTDVVDNNNYEQDSLLGDIQKYNRLFGEQSNASIAERLRDLPFLLRRLFRDFANPNVSFPLVIRARIFVTVVVNRVGLEIISRNVGGDFEPLFL* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0037 162 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Mtr3g0037 162 SMART ring_2 18 60 IPR001841 -
Mtr3g0037 162 ProSiteProfiles Zinc finger RING-type profile. 18 61 IPR001841 -
Mtr3g0037 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF170-LIKE PROTEIN (DUF 1232) 13 142 - -
Mtr3g0037 162 Pfam Zinc finger, C3HC4 type (RING finger) 15 65 - -
Mtr3g0037 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 107 IPR013083 -
Mtr3g0037 162 SUPERFAMILY RING/U-box 15 68 - -
Mtr3g0037 162 PANTHER UNCHARACTERIZED 13 142 IPR038896 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0037 Mtr-Chr3 403926 404969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0037 39 142 C3H Transcription Factor Family AT1G22510 49.057 2.84e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0037 K15707 - csin:114262088 179.104