Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0026 ATGAAATTGATTTATTTAGAGTATAGAGTTGATCAGAAACATAAGATGGGGAGGGGAAAGATTGAGATAAAAAGGATTGAGAATACAACAAATAGGCAAGTGACTTTTTGCAAGAGAAGGAATGGACTTCTGAAGAAAGCTTATGAACTATCAGTTTTGTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGCAGACTTTATGAATATTCAAACAACAACATAAGGTCAACAATTGATAGGTACAAAAAAGCTTGTTCAGATCATTCAAGTACCACCACTACCACTGAAATTAACGCTCAGTATTATCAGCAAGAATCTGCAAAGCTGAGACAACAAATACAGATGCTGCAAAATTCTAACAGGCACTTGATGGGTGATGCATTAAGCACACTCACTGTGAAGGAATTGAAGCAGCTGGAGAATAGACTTGAAAGAGGAATCACTAGAATTAGATCTAAGAAACATGAGATGCTACTGGCTGAAATTGAATACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAAAATCTTTGTCTTCGGACTAAGATAAATGATGTTGAGAGGCTTCCTCAAGTGAACATGGTTTCTGGACAAGAGCTGAATGCAATCCAAGCATTAGCATCTCGTAATTTTTTCAATCCAAACATGATGGAAGATGGTGAAACTTCCTACCATCAATCAGATAAGAAGATTCTTCATCTTGGGTGA 717 0.3738 MKLIYLEYRVDQKHKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKINDVERLPQVNMVSGQELNAIQALASRNFFNPNMMEDGETSYHQSDKKILHLG* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0026 238 SUPERFAMILY SRF-like 17 95 IPR036879 GO:0003677|GO:0046983
Mtr3g0026 238 Coils Coil 102 122 - -
Mtr3g0026 238 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Mtr3g0026 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Mtr3g0026 238 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Mtr3g0026 238 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Mtr3g0026 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 17 228 - -
Mtr3g0026 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 228 - -
Mtr3g0026 238 Coils Coil 139 159 - -
Mtr3g0026 238 Gene3D - 28 123 IPR036879 GO:0003677|GO:0046983
Mtr3g0026 238 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mtr3g0026 238 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mtr3g0026 238 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mtr3g0026 238 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr3g0026 238 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Mtr3g0026 238 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0026 Mtr-Chr3 263911 270427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0026 16 238 MADS-box Gene Family AT4G09960 74.783 7.68e-119 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr3g0026 K-box 8.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0026 K09264 - gmx:100301905 408.297