Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0025 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATAGAAAGAGAGGAAAGAACGAAGCTGACGATGAGAAACGCGAACTGATCTTCAAAGAAGACGGTCAAGAATACGCACAGGTAACACGTATGCTTGGAAACGGACGGTTGGAAGCGAATTGCATCGACAACGAGAACAACATCAGAAAACGTCTCTGTCATATCCGGGGTAAGATGCACAAGAAGGTTTGGATTGCTAACGGAGATATAATACTTATTGGATTACGTGATTATCAGGATGATAAGGCTGATGTGATATTGAAATATATGCCGGATGAGGCGAGGCTATTGAAGGCTTATGATGAGATTCCGGAATCTATTAGGCTTAATGAAGGTATTGCTGGTGGGATGGATGATGATGATGCTGATGGTGATGCTAATGATTATGTTCATTTTGAGGATGAGGATATTGATAGGATTTGA 453 0.4172 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVTRMLGNGRLEANCIDNENNIRKRLCHIRGKMHKKVWIANGDIILIGLRDYQDDKADVILKYMPDEARLLKAYDEIPESIRLNEGIAGGMDDDDADGDANDYVHFEDEDIDRI* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0025 150 CDD S1_IF1A 33 113 IPR001253 GO:0003743|GO:0006413
Mtr3g0025 150 Hamap Translation initiation factor 1A [eif1a]. 16 114 IPR001253 GO:0003743|GO:0006413
Mtr3g0025 150 ProSiteProfiles S1 domain IF1 type profile. 22 100 IPR006196 GO:0003723|GO:0003743|GO:0006413
Mtr3g0025 150 MobiDBLite consensus disorder prediction 1 25 - -
Mtr3g0025 150 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 112 IPR001253 GO:0003743|GO:0006413
Mtr3g0025 150 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 1 150 - -
Mtr3g0025 150 SUPERFAMILY Nucleic acid-binding proteins 2 146 IPR012340 -
Mtr3g0025 150 Gene3D - 2 150 IPR012340 -
Mtr3g0025 150 SMART eIF1neu4 28 114 IPR001253 GO:0003743|GO:0006413
Mtr3g0025 150 Pfam Translation initiation factor 1A / IF-1 32 97 IPR006196 GO:0003723|GO:0003743|GO:0006413
Mtr3g0025 150 PANTHER EIF-1A 1 150 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0025 Mtr-Chr3 261044 261777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0025 1 150 Eukaryotic Initiation Factors Gene Family AT2G04520 81.333 3.77e-78 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0025 K03236 - cit:102627510 236.498