Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0023 ATGTTACCTATCTTTTTAAGTTTAGATACCTATAGTGTAACAGATGAGTTGTTATCACTGCAGAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCGACAATGTTGCTACCATTACTGTTCCCGATGGTCGTGAGTGGAATATGGAACTAAAGAAATGTGGCGGCCAAATTTTCTTTTGCAACAATTGGCAACAGTTTGCAGAATACTATTGTATTTATTATGGTTGTTATTTAGATTTCAAATATGAAGGGAATTCAAAGTTCAATGTTGTTATATACGATAGAACTTCTGTTGAGATTTCTTATCCATTCCAAACTCGGAGGACTAATGGAGAACCAAACATAAACTGTCCGAGCTCTGCTTCCAATGGAATCAACCCAAAAAACACTTCTTTTTGTTCCAAAGTCCAGAACAACTACGCATATGTTCCTGGTGAATTTGCTAAGGAGCATCTGAAGCCAAATGTTCCGTTCATGCTCCAAAATTATCAAGGAAAGCAGTGGGAAGTTTCTTGTGTATTGGATAGAGCAAGTAAAACACCAATGCGAATTACGAGTGGATTCTGTAGATTTGCAAGGGAAAACAATCTATCAAAGGAAGTTTTTTACAACTTTGAGCTGATAAAGAGAAAGCCTGTTGTTGTGTTACAAGCTACTACATCTCGCACGGCAGAGATGGAAATTAGGGAATCCAAACATTTTAAGAAGGCCATACTTCCCTCACCCATTCATGACAAAGAAATTAGAATTCCTGAAGTCTTTATAACAATATATGGGAGCGAACTCAAGAATGTTGCTACAATTACTGTACCGGATGGTCTTACTTGGAAATTGGAATTGAAGAAACGTGGGGAGGATGTTTACTTTTGCAACAAATGGAAACAATTTGCAGAATACTATTCTTTAAGATATGGTTGCTTCATGTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGTAACTTCTGTTGAGATTTGCTATCCACTCAAAACTCCAAGTACTAATGGAGAAACAAACACAGAGTGTCCTAGACCTACGAAAAGGTCCAGGGTTGAAATCAATTATGCTGATGATTCACCAAGTGAGGATGAAGGAACAGAATTAAACCCTTCTTTTACTTCTACCTATAAGTATAGAACTCTGTATATTAATGCTGATTTTGCATCAAAGCATCTGAAACGAAATGTTGTTGTGAAGCTCCAAAATTGCAATGGAGGAGAGCAATGGGATGTTTGTTGTACACGTTTAGGTCGTTCAGGACTGCGATTGGGGAAAGGATTCATTAAATTTGCAACGTACAACAATTTGTCAAACGGTGATAAATGCAAGGTTGAGTTGATTAAGAAATCATCGCCAGTTGTGTTACAACTTGATCTTAGAATTCCAGATGGATTTATAAAAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCCGATGGCTGTGATTGGGAAATGGAACTGAAGAAATGCGGCAACGACGTTTACTTTTGCAACAAATGGCAACAGTTTGCAGAATACTATTCTATAGGGTATGGTTCCTTCTTGCGTTTCAAATATGAAGGGGATTCAAAGTTTAATGTTGTTATATTTGATGTAACTTCTGTTGAGATTTGCTATCCATTCAAAACTCAAAGTATTAATGGAGAAACAAACACAAAGTGTCATAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGACAATCATGCTTCTAAAAGATCAGAGGAAGCTGCCAAGGAATTCAATCCAAAAAACCCTTACTTTTGTTCCAAAATTCTTAAGAGAAAATATGTGTATGTTAATGCTGATTTTGCTTCAAAGTATCTAAAGCCAAATGTTCCTATAAAGATCCAAACTTCTCATGGTGAGCAGTGGGAAGTTTTTGGCATATTGCATGACGCCAATTCGTCATCAGCAATGAAAATAACGAGGGGATTTTCAATATTTCAAAGGGACAATAATCTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAATAATCCGTTGGTGCTAAAAGTCACAATGTTTCGTGCGGCTGACTATGGCGATTAA 2094 0.3653 MLPIFLSLDTYSVTDELLSLQRIPDEFITRFGNELDNVATITVPDGREWNMELKKCGGQIFFCNNWQQFAEYYCIYYGCYLDFKYEGNSKFNVVIYDRTSVEISYPFQTRRTNGEPNINCPSSASNGINPKNTSFCSKVQNNYAYVPGEFAKEHLKPNVPFMLQNYQGKQWEVSCVLDRASKTPMRITSGFCRFARENNLSKEVFYNFELIKRKPVVVLQATTSRTAEMEIRESKHFKKAILPSPIHDKEIRIPEVFITIYGSELKNVATITVPDGLTWKLELKKRGEDVYFCNKWKQFAEYYSLRYGCFMSFKYEGNSKFSVIIFDVTSVEICYPLKTPSTNGETNTECPRPTKRSRVEINYADDSPSEDEGTELNPSFTSTYKYRTLYINADFASKHLKRNVVVKLQNCNGGEQWDVCCTRLGRSGLRLGKGFIKFATYNNLSNGDKCKVELIKKSSPVVLQLDLRIPDGFIKRFGNELKNVATITVPDGCDWEMELKKCGNDVYFCNKWQQFAEYYSIGYGSFLRFKYEGDSKFNVVIFDVTSVEICYPFKTQSINGETNTKCHSPRKRSKVETSDNHASKRSEEAAKEFNPKNPYFCSKILKRKYVYVNADFASKYLKPNVPIKIQTSHGEQWEVFGILHDANSSSAMKITRGFSIFQRDNNLSHGDYCVFELIKNNPLVLKVTMFRAADYGD* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0023 697 CDD B3_DNA 22 97 IPR003340 GO:0003677
Mtr3g0023 697 SMART B3_2 600 693 IPR003340 GO:0003677
Mtr3g0023 697 SMART B3_2 135 223 IPR003340 GO:0003677
Mtr3g0023 697 SMART B3_2 5 99 IPR003340 GO:0003677
Mtr3g0023 697 SMART B3_2 455 545 IPR003340 GO:0003677
Mtr3g0023 697 SMART B3_2 237 329 IPR003340 GO:0003677
Mtr3g0023 697 CDD B3_DNA 381 459 IPR003340 GO:0003677
Mtr3g0023 697 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Mtr3g0023 697 SUPERFAMILY DNA-binding pseudobarrel domain 132 219 IPR015300 -
Mtr3g0023 697 SUPERFAMILY DNA-binding pseudobarrel domain 376 466 IPR015300 -
Mtr3g0023 697 SUPERFAMILY DNA-binding pseudobarrel domain 467 544 IPR015300 -
Mtr3g0023 697 ProSiteProfiles B3 DNA-binding domain profile. 452 545 IPR003340 GO:0003677
Mtr3g0023 697 Gene3D - 579 696 IPR015300 -
Mtr3g0023 697 Gene3D - 120 228 IPR015300 -
Mtr3g0023 697 Gene3D - 370 463 IPR015300 -
Mtr3g0023 697 SUPERFAMILY DNA-binding pseudobarrel domain 19 98 IPR015300 -
Mtr3g0023 697 SUPERFAMILY DNA-binding pseudobarrel domain 593 692 IPR015300 -
Mtr3g0023 697 CDD B3_DNA 602 691 IPR003340 GO:0003677
Mtr3g0023 697 Pfam B3 DNA binding domain 605 692 IPR003340 GO:0003677
Mtr3g0023 697 Pfam B3 DNA binding domain 239 327 IPR003340 GO:0003677
Mtr3g0023 697 Pfam B3 DNA binding domain 459 543 IPR003340 GO:0003677
Mtr3g0023 697 Pfam B3 DNA binding domain 139 214 IPR003340 GO:0003677
Mtr3g0023 697 ProSiteProfiles B3 DNA-binding domain profile. 236 329 IPR003340 GO:0003677
Mtr3g0023 697 SUPERFAMILY DNA-binding pseudobarrel domain 234 328 IPR015300 -
Mtr3g0023 697 CDD B3_DNA 467 543 IPR003340 GO:0003677
Mtr3g0023 697 Gene3D - 464 546 IPR015300 -
Mtr3g0023 697 Gene3D - 229 330 IPR015300 -
Mtr3g0023 697 Gene3D - 9 100 IPR015300 -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING 231 362 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING 358 466 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING 22 122 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING 466 575 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING 577 692 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING 124 224 - -
Mtr3g0023 697 MobiDBLite consensus disorder prediction 565 590 - -
Mtr3g0023 697 CDD B3_DNA 235 327 IPR003340 GO:0003677
Mtr3g0023 697 ProSiteProfiles B3 DNA-binding domain profile. 627 693 IPR003340 GO:0003677
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 124 224 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 358 466 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 577 692 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 466 575 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 22 122 - -
Mtr3g0023 697 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 231 362 - -
Mtr3g0023 697 MobiDBLite consensus disorder prediction 562 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0023 Mtr-Chr3 240979 246249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0023 467 558 B3 DNA Binding Superfamily AT4G01580 38.043 3.72e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g0023 B3 8.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0023 - - mtr:MTR_3g005495 917.146