Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0022 ATGGCTCTTATACCGAGAATTCCAGATGAATTTATAAAAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCCGATGGTTGTGATTGGGAAATGAAACTGAAGAAATGCGGCAATGACGTTTACTTTTGCAACAAATGGCAACAGTTTGCAGAATACTATTCTATAGGGTATGGTTCCTTCCTGTGTTTCAAATATGAAGGGGATTCAAAGTTTAGTGTCTTTATATTTGATGCAACTTCTATTGAGATTTGCTATCCATTCAAAACTCAAAGTACAAATGGAGAAACAAAAACAAAGTTTCATAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGACAATCATGCTTCTAAAAGAGCAGAGGAAGCTGCCAAAGAATTTAATCCAAAAAACCCTTATTTTTGTTCCAAAATTCTTAAGGGAAATTATGTGTATGTTAATGCTGATTTTGCTTCAAAGCATCTGAATCCAAATGTTCCTATAAAGCTCCAAAATTCTCACGGAAAGCAGTGGGAAGTTTCATGTGCAATGCATGATGCCAAATCATCATCAACAGCAATGATAATATCAAGGGGATTTCCTATATTTCTAAGGGGCAACAATCTGTCTCATGGAGATTATTGTGTGTTCGAGCTGATCAATAAGACGCCGGATGTGCTAAAAGTCACAATGTTTCGTAGAATTCCAGATGGATTTATAAAAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCCGATGGCTGTGATTGGGAAATGGAACTGAAGAAATGCGGCAACGACGTTTACTTTTGCAACAAATGGCAACAGTTTGCAGAATACTATTCTATAGGGTATGGTTCCTTCTTGCGTTTCAAATATGAAGGGGATTCAAAGTTTAATGTTGTTATATTTGATGTAACTTCTGTTGAGATTTGCTATCCATTCAAAACTCAAAGTATTAATGGAGAAACAAACACAAAGTGTCATAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGACAATCATGCTTCTAAAAGATCAGAGGAAGCTGCCAAGGAATTCAATCCAAAAAACCCTTACTTTTGTTCCAAAATTCTTAAGAGAAAATATGTGTATGTTAATGCTGATTTTGCTTCAAAGTATCTAAAGCCAAATGTTCCTATAAAGATCCAAACTTCTCATGGTGAGCAGTGGGAAGTTTTTGGCATATTGCATGACGCCAATTCGTCATCAGCAATGAAAATAACGAGGGGATTTTCAATATTTCAAAGGGACAATAATCTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAATAATCCGTTGGTGCTAAAAGTCACAATGTTTCGTGCGGCTGACTATGGCGATTAA 1383 0.3623 MALIPRIPDEFIKRFGNELKNVATITVPDGCDWEMKLKKCGNDVYFCNKWQQFAEYYSIGYGSFLCFKYEGDSKFSVFIFDATSIEICYPFKTQSTNGETKTKFHSPRKRSKVETSDNHASKRAEEAAKEFNPKNPYFCSKILKGNYVYVNADFASKHLNPNVPIKLQNSHGKQWEVSCAMHDAKSSSTAMIISRGFPIFLRGNNLSHGDYCVFELINKTPDVLKVTMFRRIPDGFIKRFGNELKNVATITVPDGCDWEMELKKCGNDVYFCNKWQQFAEYYSIGYGSFLRFKYEGDSKFNVVIFDVTSVEICYPFKTQSINGETNTKCHSPRKRSKVETSDNHASKRSEEAAKEFNPKNPYFCSKILKRKYVYVNADFASKYLKPNVPIKIQTSHGEQWEVFGILHDANSSSAMKITRGFSIFQRDNNLSHGDYCVFELIKNNPLVLKVTMFRAADYGD* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0022 460 MobiDBLite consensus disorder prediction 328 353 - -
Mtr3g0022 460 ProSiteProfiles B3 DNA-binding domain profile. 165 232 IPR003340 GO:0003677
Mtr3g0022 460 MobiDBLite consensus disorder prediction 325 353 - -
Mtr3g0022 460 CDD B3_DNA 6 81 IPR003340 GO:0003677
Mtr3g0022 460 PANTHER B3 DOMAIN-CONTAINING 339 455 - -
Mtr3g0022 460 PANTHER B3 DOMAIN-CONTAINING 6 113 - -
Mtr3g0022 460 PANTHER B3 DOMAIN-CONTAINING 115 230 - -
Mtr3g0022 460 PANTHER B3 DOMAIN-CONTAINING 231 338 - -
Mtr3g0022 460 SUPERFAMILY DNA-binding pseudobarrel domain 131 230 IPR015300 -
Mtr3g0022 460 SMART B3_2 223 308 IPR003340 GO:0003677
Mtr3g0022 460 SMART B3_2 2 83 IPR003340 GO:0003677
Mtr3g0022 460 SMART B3_2 363 456 IPR003340 GO:0003677
Mtr3g0022 460 SMART B3_2 138 222 IPR003340 GO:0003677
Mtr3g0022 460 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 339 455 - -
Mtr3g0022 460 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 115 230 - -
Mtr3g0022 460 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 6 113 - -
Mtr3g0022 460 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 231 338 - -
Mtr3g0022 460 ProSiteProfiles B3 DNA-binding domain profile. 390 456 IPR003340 GO:0003677
Mtr3g0022 460 Pfam B3 DNA binding domain 143 231 IPR003340 GO:0003677
Mtr3g0022 460 Pfam B3 DNA binding domain 6 81 IPR003340 GO:0003677
Mtr3g0022 460 Pfam B3 DNA binding domain 368 455 IPR003340 GO:0003677
Mtr3g0022 460 SUPERFAMILY DNA-binding pseudobarrel domain 6 82 IPR015300 -
Mtr3g0022 460 CDD B3_DNA 220 306 IPR003340 GO:0003677
Mtr3g0022 460 MobiDBLite consensus disorder prediction 109 126 - -
Mtr3g0022 460 CDD B3_DNA 365 454 IPR003340 GO:0003677
Mtr3g0022 460 CDD B3_DNA 136 230 IPR003340 GO:0003677
Mtr3g0022 460 Gene3D - 342 459 IPR015300 -
Mtr3g0022 460 Gene3D - 117 231 IPR015300 -
Mtr3g0022 460 MobiDBLite consensus disorder prediction 96 126 - -
Mtr3g0022 460 SUPERFAMILY DNA-binding pseudobarrel domain 356 455 IPR015300 -
Mtr3g0022 460 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Mtr3g0022 460 SUPERFAMILY DNA-binding pseudobarrel domain 228 307 IPR015300 -
Mtr3g0022 460 ProSiteProfiles B3 DNA-binding domain profile. 233 308 IPR003340 GO:0003677
Mtr3g0022 460 Gene3D - 4 84 IPR015300 -
Mtr3g0022 460 Gene3D - 232 309 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0022 Mtr-Chr3 232276 240866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0022 6 89 B3 DNA Binding Superfamily AT3G18990 45.238 7.14e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g0022 B3 4.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0022 - - mtr:MTR_3g005420 530.791