Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0021 ATGGCTCTTATACCGAGAATTCCAGATGAATTTATAAAAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCCGATGGTTGTGATTGGGAAATGAAACTGAAGAAATGCGGCAATGACGTTTACTTTTGCAACAAATGGCAACAGTTTGCAGAATACTATTCTATAGGGTATGGTTCCTTCCTGTGTTTCAAATATGAAGGGGATTCAAAGTTTAGTGTCTTTATATTTGATGCAACTTCTATTGAGATTTGCTATCCATTCAAAACTCAAAGTACAAATGGAGAAACAAAAACAAAGTTTCATAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGACAATCATGCTTCTAAAAGAGCAGAGGAAGCTGCCAAAGAATTTAATCCAAAAAACCCTTATTTTTGTTCCAAAATTCTTAAGGGAAATTATGTGTATGTTAATGCTGATTTTGCTTCAAAGCATCTGAATCCAAATGTTCCTATAAAGCTCCAAAATTCTCACGGAAAGCAGTGGGAAGTTTCATGTGCAATGCATGATGCCAAATCATCATCAACAGCAATGATAATATCAAGGGGATTTCCTATATTTCTAAGGGGCAACAATCTGTCTCATGGAGATTATTGTGTGTTCGAGCTGATCAATAAGACGCCGGATGTGCTAAAAGTCACAATGTTTCGTGTGATTGACTATTACGTTTAA 711 0.3586 MALIPRIPDEFIKRFGNELKNVATITVPDGCDWEMKLKKCGNDVYFCNKWQQFAEYYSIGYGSFLCFKYEGDSKFSVFIFDATSIEICYPFKTQSTNGETKTKFHSPRKRSKVETSDNHASKRAEEAAKEFNPKNPYFCSKILKGNYVYVNADFASKHLNPNVPIKLQNSHGKQWEVSCAMHDAKSSSTAMIISRGFPIFLRGNNLSHGDYCVFELINKTPDVLKVTMFRVIDYYV* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0021 236 CDD B3_DNA 6 81 IPR003340 GO:0003677
Mtr3g0021 236 ProSiteProfiles B3 DNA-binding domain profile. 165 232 IPR003340 GO:0003677
Mtr3g0021 236 Pfam B3 DNA binding domain 143 230 IPR003340 GO:0003677
Mtr3g0021 236 Pfam B3 DNA binding domain 6 81 IPR003340 GO:0003677
Mtr3g0021 236 MobiDBLite consensus disorder prediction 109 126 - -
Mtr3g0021 236 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 115 232 - -
Mtr3g0021 236 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 6 113 - -
Mtr3g0021 236 Gene3D - 4 84 IPR015300 -
Mtr3g0021 236 PANTHER B3 DOMAIN-CONTAINING 115 232 - -
Mtr3g0021 236 PANTHER B3 DOMAIN-CONTAINING 6 113 - -
Mtr3g0021 236 CDD B3_DNA 136 230 IPR003340 GO:0003677
Mtr3g0021 236 MobiDBLite consensus disorder prediction 96 126 - -
Mtr3g0021 236 SUPERFAMILY DNA-binding pseudobarrel domain 6 82 IPR015300 -
Mtr3g0021 236 SMART B3_2 2 83 IPR003340 GO:0003677
Mtr3g0021 236 SMART B3_2 138 232 IPR003340 GO:0003677
Mtr3g0021 236 Gene3D - 117 235 IPR015300 -
Mtr3g0021 236 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Mtr3g0021 236 SUPERFAMILY DNA-binding pseudobarrel domain 131 230 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0021 Mtr-Chr3 227548 232163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0021 6 89 B3 DNA Binding Superfamily AT3G18990 45.238 2.84e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g0021 B3 1.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0021 - - mtr:MTR_5g070440 332.413