Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0020 ATGAAGCCTCGCCCGAGAAGACGTGTTCCGTCAACGTCACCGGCGGCGGCGGCGGAGAAAGATTCAAAGCATTTTATGAAAGCCATACTTCCTCCTCCTGATCATACAAAAGAGATAAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCGACAATGTTGCTACCATTACCGTTCCCGATGCTCTTGAGTGGGATATGGAACTCAAGAAATGTGGCGGCCAAATTTTCTTTTGCAACAATTGGCAGCAATTTGCAGAATACTATTCTATTTATTATGGTTGTTATTTAGATTTCAAATACGAAGGGAATTCAAAGTTCAATGTTGTTATATACGATACAACTTCTGTTGAGATTTCTTATCCATTCCAAACTCGGAGGACTAATGGAGAAGCAAACATAAACTGTCCGAGCTCTGCTTCCGAAAGATCAAAGGATGCTGCCAATGGAATCAACCCAAAAAACACTTCTTTTTGTTCCAAAGTCCAGAACAACTACGCATATGTTCCTGGTGAATTTGCTAAGGAGCATCTGAAGCCAAATGTTCCGTTCATGCTCCAAAATTCTCAAAAAAAGCAGTGGGAAGTTTCTGGTGCATTGGATAGACCAGGAAAACCAGCAATGCGAATAACTATTGGAATCCGTAGATTTCTTAGGGAAAACAAGTTATTAGATGGAGTTATTTGTCGCTTTAAGCTGATCAAGAAGAAGCCTGTTGTTGTGATACAAGTTACAGCGTCTCACATGGCGGAGAAGGAAGTTAGGGAATCCATACATTTTAAAAAAGCTATACTTCCCTCACCCATTTATGACAAAGAAATTAGAATTCCAGAAAACTTTATAACAATGTTTGGGAATGAACTCGAGAATGTTGCTACAGTTACTGTTCCCGATGGTTGTGATTGGGAAATGGACTTGAAGAAATGTGGCGAGGATGTTTACTTTTGCAACAAGGAATGGCAACAGTTTGCAGAATACTATTCTTTAAGATACGGTTGCTTCCTGTCTTTCAGATACGAAGGGAATTCAAATTTTAGCGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCATTAAAAACTCCAAGTACTAGTGGAGAAACAAACACCGAGTGTCCTAGGCCTATGAAAAGGTCCAAGGTTGAAACAAGTGAGAGTCCAGGGAAAAAGGTCAAAAGCATGTCTAATTATGCTTATAAAAGGGCAGAGGATGCTGCCAATGCATTCAACCCGAAAAACCCTCATTTTCGTTCAAAAATCACCAAGGGAAGACATGCGTATGTTCCTTCTATATTTGCTTCAGAATATCTGAAGCCAAATGCTCCTATAAAGCTCCTAAATTCTCATAGAGAGGAGTGGAAAGTTTTTGGCATAGAGCATAATGCCAGATCATCAACGCGTAAAGCAAAGTCACCAGCCATGCAAATAACACAGGGATTTAGTCAATTCATAAGGGAGAACGATCTATCATATGGTGACTGTTGTGTGTATGAGCTGATCGAGGAGAACCCTCCTGTGCTAGAAGTCACGATGTTTTGTGTGGTTGACTATTGGGATTAA 1572 0.3976 MKPRPRRRVPSTSPAAAAEKDSKHFMKAILPPPDHTKEIRIPDEFITRFGNELDNVATITVPDALEWDMELKKCGGQIFFCNNWQQFAEYYSIYYGCYLDFKYEGNSKFNVVIYDTTSVEISYPFQTRRTNGEANINCPSSASERSKDAANGINPKNTSFCSKVQNNYAYVPGEFAKEHLKPNVPFMLQNSQKKQWEVSGALDRPGKPAMRITIGIRRFLRENKLLDGVICRFKLIKKKPVVVIQVTASHMAEKEVRESIHFKKAILPSPIYDKEIRIPENFITMFGNELENVATVTVPDGCDWEMDLKKCGEDVYFCNKEWQQFAEYYSLRYGCFLSFRYEGNSNFSVIIFDATSVEICYPLKTPSTSGETNTECPRPMKRSKVETSESPGKKVKSMSNYAYKRAEDAANAFNPKNPHFRSKITKGRHAYVPSIFASEYLKPNAPIKLLNSHREEWKVFGIEHNARSSTRKAKSPAMQITQGFSQFIRENDLSYGDCCVYELIEENPPVLEVTMFCVVDYWD* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0020 523 Gene3D - 16 118 IPR015300 -
Mtr3g0020 523 Gene3D - 254 356 IPR015300 -
Mtr3g0020 523 SUPERFAMILY DNA-binding pseudobarrel domain 260 354 IPR015300 -
Mtr3g0020 523 SUPERFAMILY DNA-binding pseudobarrel domain 413 517 IPR015300 -
Mtr3g0020 523 ProSiteProfiles B3 DNA-binding domain profile. 261 355 IPR003340 GO:0003677
Mtr3g0020 523 PANTHER B3 DOMAIN-CONTAINING 141 248 - -
Mtr3g0020 523 PANTHER B3 DOMAIN-CONTAINING 19 139 - -
Mtr3g0020 523 PANTHER B3 DOMAIN-CONTAINING 385 519 - -
Mtr3g0020 523 PANTHER B3 DOMAIN-CONTAINING 255 385 - -
Mtr3g0020 523 MobiDBLite consensus disorder prediction 370 394 - -
Mtr3g0020 523 Pfam B3 DNA binding domain 264 354 IPR003340 GO:0003677
Mtr3g0020 523 CDD B3_DNA 261 353 IPR003340 GO:0003677
Mtr3g0020 523 SUPERFAMILY DNA-binding pseudobarrel domain 154 244 IPR015300 -
Mtr3g0020 523 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Mtr3g0020 523 MobiDBLite consensus disorder prediction 377 391 - -
Mtr3g0020 523 CDD B3_DNA 23 115 IPR003340 GO:0003677
Mtr3g0020 523 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 385 519 - -
Mtr3g0020 523 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 19 139 - -
Mtr3g0020 523 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 255 385 - -
Mtr3g0020 523 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 141 248 - -
Mtr3g0020 523 SMART B3_2 420 519 IPR003340 GO:0003677
Mtr3g0020 523 SMART B3_2 25 117 IPR003340 GO:0003677
Mtr3g0020 523 SMART B3_2 262 355 IPR003340 GO:0003677
Mtr3g0020 523 Gene3D - 399 522 IPR015300 -
Mtr3g0020 523 Gene3D - 140 253 IPR015300 -
Mtr3g0020 523 CDD B3_DNA 418 517 IPR003340 GO:0003677
Mtr3g0020 523 SUPERFAMILY DNA-binding pseudobarrel domain 21 116 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0020 Mtr-Chr3 220632 223583 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0020 262 363 B3 DNA Binding Superfamily AT4G01580 43.137 5.29e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g0020 B3 1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0020 - - mtr:MTR_3g005420 648.277