Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0017 ATGCAGCAGCATAACGTAAAACTTATCATTATTATTTGCATTGCAACAAACAACACAATGCAGCCTCACCGGAGAAGATGTGGCCGGTCACCGGCGCCGGAGAAAGCATCGAAGCATTTTATGAAAGCCATACTACCCCCTCCTGATCACACCAAAGAGATACGAATTCCAAATGAGTTTATAAAAAGATTTGGAAACGAACTAAAGAATGTTGCTACGATTACTGTTCCTGATGGTCGTCATGAATGGGAAATGGGACTGAAGAAATGTGGCGAGCACGTTTTCCTTAGCAACAATTGGCAACAGTTTGCAGAATACTATTGTATTTATTATGGTTGTTATTTAGATTTCAACTATCAAGGGAATTCAAAGTTTAATGTTGTTATATATGATACAACTTCTGTTGAGATTTCTTATTCATTCAAAACTCCAAGTACTAATGGAGATCAAAGGATAAAGGGTCCCAACTCTGCTTCCAAAAGAGAAAATTGTGCTGCCAGTGAATTCAACCCAAAAAACCCATATTTTTATTCAAAATCCAACAGGGGCTTTTATGCATATGTTCCTTCTATTTTTGCTGAAAAGTATCTGACGCTAAAGGTTCCGTTCAAGCTCCAAAATTCTCAAGGAAAGCAGTGGGAAGTTTATTGTGTATTGCATAACAAAGGAAATTCGCAAATGCGAATAACCGGTGGATTCGGTAAATTTGCAAGGGAAAACAATCTACTAGAGGGAGTTACATATGTGTTTGAGCTGATCAAGAGAAAGCCTGTTGTTGTGCTACAAGTTACAGCGATTTGCACGCCTCCACAGGGAAGGTCTGTCCAGTCAATGACAGAAAAGGAAGTAAGGGAATCCAAACATTTCAAGAAGGCCATACTTCCCTCGCCCATTCATGACAAAGAGATAAGAATTCCTGAAGACTTTATAACAATGTTTGGGAATGAACTCGAGAAAGTTGCTACAGTTACAGTTCCCGATGGTCGTGATTGGAAAATGAGATTGAAGAAACGCGGCAATGACATTTTCTTTTCCAACGAATGGGAAGAGTTCGCAAAATACTATTCATTAGGTGTTAATGGAGAACCAAACACAAAATGTGCTAGTCCTACGAAAAGGTCCAAGGTTGAAACAAGTGAGTGTCATGGGAAAAAGGCCAAAAGCGTGTCTAAACATGCTTCTACAAGAGCAGAGGTTGCTGCCAATGAATTCAAACCAAAAAACCCTTATTTTTGTTCAATAATCGCCAAGCAGAATTATACGTATATTCCTCGTGATTTTGCTGAAAAGTATTTGAAACCAAAGGTTCCTACAAAGCTCCAAAATTCTGATGGAAAACAGTGGGAAGTGTTTTGCGTACCGAATACTGTCGGATCATCGTCGATGCGAATAGTGAAGGGATTTTCTAATTTTGTAACTGACAACAATCTGTCACATCGAGATTATTGTGTGTATGAGCTCATCAAGAAGAAGCCGGTTGTGCTAGAAGTCACAATGTTTCGTGCGGTTGACTATCTTGACTAA 1524 0.3917 MQQHNVKLIIIICIATNNTMQPHRRRCGRSPAPEKASKHFMKAILPPPDHTKEIRIPNEFIKRFGNELKNVATITVPDGRHEWEMGLKKCGEHVFLSNNWQQFAEYYCIYYGCYLDFNYQGNSKFNVVIYDTTSVEISYSFKTPSTNGDQRIKGPNSASKRENCAASEFNPKNPYFYSKSNRGFYAYVPSIFAEKYLTLKVPFKLQNSQGKQWEVYCVLHNKGNSQMRITGGFGKFARENNLLEGVTYVFELIKRKPVVVLQVTAICTPPQGRSVQSMTEKEVRESKHFKKAILPSPIHDKEIRIPEDFITMFGNELEKVATVTVPDGRDWKMRLKKRGNDIFFSNEWEEFAKYYSLGVNGEPNTKCASPTKRSKVETSECHGKKAKSVSKHASTRAEVAANEFKPKNPYFCSIIAKQNYTYIPRDFAEKYLKPKVPTKLQNSDGKQWEVFCVPNTVGSSSMRIVKGFSNFVTDNNLSHRDYCVYELIKKKPVVLEVTMFRAVDYLD* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0017 507 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 35 149 - -
Mtr3g0017 507 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 371 502 - -
Mtr3g0017 507 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 282 359 - -
Mtr3g0017 507 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 156 267 - -
Mtr3g0017 507 Pfam B3 DNA binding domain 182 256 IPR003340 GO:0003677
Mtr3g0017 507 Pfam B3 DNA binding domain 418 502 IPR003340 GO:0003677
Mtr3g0017 507 Pfam B3 DNA binding domain 40 130 IPR003340 GO:0003677
Mtr3g0017 507 PANTHER B3 DOMAIN-CONTAINING 35 149 - -
Mtr3g0017 507 PANTHER B3 DOMAIN-CONTAINING 156 267 - -
Mtr3g0017 507 PANTHER B3 DOMAIN-CONTAINING 371 502 - -
Mtr3g0017 507 PANTHER B3 DOMAIN-CONTAINING 282 359 - -
Mtr3g0017 507 SMART B3_2 177 265 IPR003340 GO:0003677
Mtr3g0017 507 SMART B3_2 289 374 IPR003340 GO:0003677
Mtr3g0017 507 SMART B3_2 40 133 IPR003340 GO:0003677
Mtr3g0017 507 SMART B3_2 411 503 IPR003340 GO:0003677
Mtr3g0017 507 ProSiteProfiles B3 DNA-binding domain profile. 406 503 IPR003340 GO:0003677
Mtr3g0017 507 SUPERFAMILY DNA-binding pseudobarrel domain 286 360 IPR015300 -
Mtr3g0017 507 ProSiteProfiles B3 DNA-binding domain profile. 39 133 IPR003340 GO:0003677
Mtr3g0017 507 SUPERFAMILY DNA-binding pseudobarrel domain 169 261 IPR015300 -
Mtr3g0017 507 CDD B3_DNA 409 501 IPR003340 GO:0003677
Mtr3g0017 507 CDD B3_DNA 287 360 IPR003340 GO:0003677
Mtr3g0017 507 CDD B3_DNA 187 256 IPR003340 GO:0003677
Mtr3g0017 507 Gene3D - 32 134 IPR015300 -
Mtr3g0017 507 Gene3D - 280 361 IPR015300 -
Mtr3g0017 507 CDD B3_DNA 38 131 IPR003340 GO:0003677
Mtr3g0017 507 SUPERFAMILY DNA-binding pseudobarrel domain 404 501 IPR015300 -
Mtr3g0017 507 Gene3D - 156 268 IPR015300 -
Mtr3g0017 507 Gene3D - 388 506 IPR015300 -
Mtr3g0017 507 SUPERFAMILY DNA-binding pseudobarrel domain 38 132 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0017 Mtr-Chr3 207379 210418 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0017 370 507 B3 DNA Binding Superfamily AT3G18990 33.793 6.96e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g0017 B3 3.2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0017 - - mtr:MTR_3g005420 1035.79