Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3776 ATGCAATTAGCTTCAAACACTGACAACCAAGATTCTTCTTCTTCTTCTTCAGAAACCCAACCCATATTGAAGAATCACCTCTGTGAAATTATTCCTATTCCTGCCAACGACGAAGACGATGACTACGACAATGAGTCTTCTCATCTTCTTGTTGTAAATGCTGATCACCCACAATGCCGGATATGCCTTGATCTTGGAGGAGAAGACTTAATTGCCCCCTGCCATTGCAAAGGTACCCAAAAGTATGTCCACAGATCATGTCTCGATAATTGGAGGTCTACCAAGGTTGTTGCTTTCTTGGGAGTTCTTATTTATAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATACGGATTTTACACAATGGCCGTTCTTGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCAATAATATGTGGGCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAGTATGTGGTAGAAGATCGAGAACATGTAAAGGACGTGCCCGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 594 0.4141 MQLASNTDNQDSSSSSSETQPILKNHLCEIIPIPANDEDDDYDNESSHLLVVNADHPQCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKDVPELDPSHVTELRMLGLY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3776 197 PANTHER OS02G0132300 PROTEIN 96 196 - -
Mtr2g3776 197 PANTHER OS02G0132300 PROTEIN 7 95 - -
Mtr2g3776 197 SUPERFAMILY RING/U-box 54 96 - -
Mtr2g3776 197 MobiDBLite consensus disorder prediction 1 20 - -
Mtr2g3776 197 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 96 196 - -
Mtr2g3776 197 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 7 95 - -
Mtr2g3776 197 Pfam RING-variant domain 59 94 IPR011016 GO:0008270
Mtr2g3776 197 ProSiteProfiles Zinc finger RING-CH-type profile. 51 115 IPR011016 GO:0008270
Mtr2g3776 197 SMART ringv_2 58 98 IPR011016 GO:0008270
Mtr2g3776 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 98 IPR013083 -
Mtr2g3776 197 CDD RING_CH-C4HC3_MARCH 59 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3776 Mtr-Chr2 51852223 51854492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3776 1 156 C3H Transcription Factor Family AT1G50440 39.810 3.19e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3776 - - mtr:MTR_2g105850 377.867