Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3766 ATGAAGCTCACTGTGAAGACTTTGAAAGGAAGCCATTTCGAAATCAGAGTTCATCCTTCTGATTCTATAATGGCTGTAAAAAAGAATATTGAAGATATTCAAGGAAAAGATAATTACCCATGCGGACAACAATTGCTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTACTTTAGCTGACAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGTAAAGTCTTGGGATCTGCTGGAACTTCATCTACTCAGACCGCTAGCAATCCACCTATAACTGTGCCAACACCAGATTCCACATCTGTAGTACAAACTCAATCTGCAAACAACAACGCATCTCCTGCAGTTCTGGCACCTACAAATGTTACTACAGATACTTATGGACAGGCTGCTTCAAATTTAGTGGCTGGAAGTAATCTTGAGCAGACTATTCAACAACTTATTGACATGGGTGGTGGCAGCTGGGACAGGGATACCGTCAATCGTGCTCTTCGTGCAGCTTTCAATAATCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAGTTGCTGTACCGGCTGCTCAATACCCAAGTAATCCAACTGAAACAGGTGGGGTGACTACCGGAGTTGTTCCTGGGGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGAGCTGGTTCACTTGACTTCTTGAGGAACAATCCCCAGTTTCAAGCATTGCGGACAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTACTTCAGGAGCTCGGAAAGCAAAATCCAGGTCTCTTGAGACTAATTGACGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGACGGTACTGAAGGAGATAATTTTGATCAGGCGGAGCAAGACATGCCTCATGCTGTCAATGTGACGCCAGCTGAGCAGGAGGCAATTGGAAGGCTAGAGGCTATGGGATTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA 1101 0.4396 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKVLGSAGTSSTQTASNPPITVPTPDSTSVVQTQSANNNASPAVLAPTNVTTDTYGQAASNLVAGSNLEQTIQQLIDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3766 366 TIGRFAM rad23: UV excision repair protein Rad23 1 365 IPR004806 GO:0006289
Mtr2g3766 366 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Mtr2g3766 366 PRINTS DNA repair protein Rad23 signature 267 289 IPR004806 GO:0006289
Mtr2g3766 366 PRINTS DNA repair protein Rad23 signature 316 332 IPR004806 GO:0006289
Mtr2g3766 366 PRINTS DNA repair protein Rad23 signature 333 347 IPR004806 GO:0006289
Mtr2g3766 366 PRINTS DNA repair protein Rad23 signature 348 363 IPR004806 GO:0006289
Mtr2g3766 366 SUPERFAMILY UBA-like 126 188 IPR009060 GO:0005515
Mtr2g3766 366 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 320 360 IPR015940 -
Mtr2g3766 366 SMART uba_6 144 184 IPR015940 -
Mtr2g3766 366 SMART uba_6 322 359 IPR015940 -
Mtr2g3766 366 SUPERFAMILY UBA-like 303 363 IPR009060 GO:0005515
Mtr2g3766 366 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mtr2g3766 366 Pfam XPC-binding domain 241 296 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mtr2g3766 366 MobiDBLite consensus disorder prediction 82 108 - -
Mtr2g3766 366 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Mtr2g3766 366 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 365 - -
Mtr2g3766 366 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mtr2g3766 366 SMART ubq_7 1 75 IPR000626 GO:0005515
Mtr2g3766 366 SUPERFAMILY XPC-binding domain 238 303 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mtr2g3766 366 Gene3D - 231 297 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mtr2g3766 366 Gene3D - 1 79 - -
Mtr2g3766 366 Gene3D - 313 361 - -
Mtr2g3766 366 Pfam UBA/TS-N domain 322 357 IPR015940 -
Mtr2g3766 366 Pfam UBA/TS-N domain 144 182 IPR015940 -
Mtr2g3766 366 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 365 - -
Mtr2g3766 366 SMART CBM 239 282 IPR006636 -
Mtr2g3766 366 CDD Ubl_Rad23 1 74 - -
Mtr2g3766 366 Gene3D - 137 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3766 Mtr-Chr2 51699501 51704486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3766 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.81e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3766 K10839 - gmx:100804038 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3766 2 51699501 51704486 Mtr2g3766 2 51699501 51704486 ECH