Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3759 ATGGATATGGTTAACCAAAGAAAGAAGAACATGGGGCGCCAGAAGATTGAGATCAAGAAGGTTGAGAAAGATTCCAACAAACTTGTCACTTTCTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCAAGCGAACTTTGTGTCTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCCCCTGGTGACAAACTCTACTGTTTTGGGCAACCCGACACTAACGTTGTCCTCAATAGCTACATCAAAGGAACCACTGAGTTTGAGGATTCAAAGTCAGCAGAAAATTCTCCGACTTGCAAAGATTACAATAGACAATATGAGGAGGCACAAAAGATGTTGGAGACGGAAAAGAAGAAACTAGAAGATGTTCAAAATTTGGCTAAGATTTTCAACAAGGGTGACTGGTGGAATGATTCAATTGATGATATGAGTAGTGATCAGCTTGAACAATTTATGGTGTCCATTTACGAGTTAAGGAGGAAGCTTGTTGAAAGGGCTGATGAACTTGTCATGAAGCAAAGTGTCATGCCCTAG 531 0.3974 MDMVNQRKKNMGRQKIEIKKVEKDSNKLVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLYCFGQPDTNVVLNSYIKGTTEFEDSKSAENSPTCKDYNRQYEEAQKMLETEKKKLEDVQNLAKIFNKGDWWNDSIDDMSSDQLEQFMVSIYELRRKLVERADELVMKQSVMP* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3759 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Mtr2g3759 176 Gene3D - 23 131 IPR036879 GO:0003677|GO:0046983
Mtr2g3759 176 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Mtr2g3759 176 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mtr2g3759 176 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mtr2g3759 176 PANTHER MADS BOX PROTEIN 8 173 - -
Mtr2g3759 176 SUPERFAMILY SRF-like 11 81 IPR036879 GO:0003677|GO:0046983
Mtr2g3759 176 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mtr2g3759 176 Coils Coil 98 125 - -
Mtr2g3759 176 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 173 - -
Mtr2g3759 176 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3759 Mtr-Chr2 51647300 51647830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3759 8 168 Type I MADS-box Gene Family AT5G60440 37.870 4.27e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g3759 SRF-TF 3.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3759 - - cam:101502875 243.432