Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3730 ATGGAGCAGTTCTCATGGGAAAATATTTGGCCTCTTGATACGGATATGGATATGGATTGGTTGGAATCGATGTGCCACCAAGATGGTGAATTCCTTGGCGAATACATGGCACAGCAATCATCTATAGTAGCCGCCGGAGCCGCCGCTGCCACGGAGATTAATGCAAGCCCGCCGGAGCTGCTTCCTATAACTAGCATTCTCTCTTCTAATAATTCCATGGCCACAATACTAGGGAAGTCCAAACCACCTTGTTACCCTAAAAAGAGGACTTCCTCAAATCTAAACTTTGAATCAAAAGCAAATGGCACAGGATTAGCCAAAGAAGAGAAGATTATTAGAAGCAAATCTAAGACTCTATTTCACACACTGGCAGAGAGGAGAAGGAGACTTGAACTAGCACATAAATTCACAGAGCTTTCAGCTATAATTCCTCGCTCAAAGAAGACAGACAAGGCCTCTATAGTTCAAGGCGCTATCAATTACGTGGAAAAACTTCAAAAACGAGTGATGGAGTTAGAAGTACAACAAAACAAGAGAGGCAAAGAACCAATAATACTTCTCAATAAGGAAAATTCTTGTGAAATGAATCTTGACAATTATCTTAGACCAATAAATAATTTTCTTCCTGATGTCAAAGTGAAAGTGTTGGAGAATAATATACTCATTTACATCAATTGTGAGAAGGAAAATGGCATTCAACACAAAATATTGGACATGCTTCAAAATCTTCATTTGTTTGTCACCAGCACTAGCATATTGCCGTTTGGCAATTCAACTCTTGGCATTACTATCATCGCTCAAATGGGTGATGCATACAGAATGACGATGATGGATCTAGTGGATAACATAAGGAAACTGTTGGTGAATGGCGCAAATCGTCGAACATGA 888 0.3986 MEQFSWENIWPLDTDMDMDWLESMCHQDGEFLGEYMAQQSSIVAAGAAAATEINASPPELLPITSILSSNNSMATILGKSKPPCYPKKRTSSNLNFESKANGTGLAKEEKIIRSKSKTLFHTLAERRRRLELAHKFTELSAIIPRSKKTDKASIVQGAINYVEKLQKRVMELEVQQNKRGKEPIILLNKENSCEMNLDNYLRPINNFLPDVKVKVLENNILIYINCEKENGIQHKILDMLQNLHLFVTSTSILPFGNSTLGITIIAQMGDAYRMTMMDLVDNIRKLLVNGANRRT* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3730 295 Gene3D - 115 181 IPR036638 GO:0046983
Mtr2g3730 295 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 293 - -
Mtr2g3730 295 Pfam Helix-loop-helix DNA-binding domain 121 166 IPR011598 GO:0046983
Mtr2g3730 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 182 IPR036638 GO:0046983
Mtr2g3730 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983
Mtr2g3730 295 Coils Coil 155 175 - -
Mtr2g3730 295 PANTHER BHLH TRANSCRIPTION FACTOR 5 293 - -
Mtr2g3730 295 SMART finulus 122 171 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3730 Mtr-Chr2 51372211 51374407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3730 101 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.821 3.71e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3730 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3730 - - mtr:MTR_2g104530 531.176