Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3729 ATGGAGCAAACATGGGAAAATTGGCCTCTTCATTCGGAAATGGTTGATGTAGAGAATATGCAAGGGCAATATTGTCATCAAACAAGTACTGATGATGAAGAAGAGTTCTTGAGAGACATAATTCTTCAGCAACCTGTTACATATTCTGGAAGCAGTTTATCATCTTCTAGTGAGATGGACGGTTCAGATAGCTCGGGGAAAAAACTTCATCTTTTATCAACACCATCCACTCCAAGGACATTCATTCTCTCTTTTGATAAATCTACCATAATACCAGCTACTACTACACCAGAATCAGAAGAAGTACCAAGAACAAAGAGTAGAAGTAATAATAATAAGAGGAGTTTGGAACCAAAAGCAAAAGCTAGTAACCAAACTGGAAAGAAGAGTAGAAGTGGTTCTCAGTGTTTGGATCACATTATGGCTGAGAGAAAAAGAAGATTGGAACTATCACAAAAGTTCATTGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGATGGACAAGACCTCTATACTTGGTGAAGCAATCAATTATGTGAAAATACTTCAAGAACGTGTGAAGGAGTTAGAGGAACGGAACAAGAGGAACAACGAATCAACAATAATCCACAAAAGTGATTTGTGTTCAAATGAACATAACAACACCTCAAATGACACAAATTCTGATCAGGATTGTTGTAAATCATCACTGCCTGATGTCAAAGCAAGAGTGTTGGAAAATGAAGTACTCATTGAGATCCATTGTGAGAAGGAAAATGGCATTGAGATCAAAATATTGAATTTGCTTGAAAATCTTCATCTTATTGTCACTGCCAGCAGTGTATTTCCTTTTGGGAATTCAACTCTTGGCTTCACTATTGTTGCTCAGATGGGTGACGAGTACAAAATGAAGGTGAATGATCTGGTGAAAACCCTACAGCAAGTGCTTCTGAATATGAGGAGTTGA 948 0.3766 MEQTWENWPLHSEMVDVENMQGQYCHQTSTDDEEEFLRDIILQQPVTYSGSSLSSSSEMDGSDSSGKKLHLLSTPSTPRTFILSFDKSTIIPATTTPESEEVPRTKSRSNNNKRSLEPKAKASNQTGKKSRSGSQCLDHIMAERKRRLELSQKFIALSATIPGLKKMDKTSILGEAINYVKILQERVKELEERNKRNNESTIIHKSDLCSNEHNNTSNDTNSDQDCCKSSLPDVKARVLENEVLIEIHCEKENGIEIKILNLLENLHLIVTASSVFPFGNSTLGFTIVAQMGDEYKMKVNDLVKTLQQVLLNMRS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3729 315 Coils Coil 173 200 - -
Mtr2g3729 315 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 313 - -
Mtr2g3729 315 MobiDBLite consensus disorder prediction 101 115 - -
Mtr2g3729 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Mtr2g3729 315 MobiDBLite consensus disorder prediction 116 133 - -
Mtr2g3729 315 MobiDBLite consensus disorder prediction 92 136 - -
Mtr2g3729 315 SMART finulus 140 189 IPR011598 GO:0046983
Mtr2g3729 315 Pfam Helix-loop-helix DNA-binding domain 137 184 IPR011598 GO:0046983
Mtr2g3729 315 MobiDBLite consensus disorder prediction 48 73 - -
Mtr2g3729 315 PANTHER BHLH TRANSCRIPTION FACTOR 1 313 - -
Mtr2g3729 315 Gene3D - 123 200 IPR036638 GO:0046983
Mtr2g3729 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 200 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3729 Mtr-Chr2 51363538 51367025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3729 6 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.395 1.45e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3729 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3729 - - cam:101501528 316.62