Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3728 ATGGAGAATTGGTTCTCTAATATGGCTATGAAGGGTACTGATAACTCCTTCAATGAGAAGCATCCAACATTAATAGGACATTGTTCTAATTCAGTGCCTCATGCTGCTAATGCTACACATGGAAAGAATAAGAGAGTGAGAAGCTCATGGGAGATACAAGGTCATATAATGTCAGAGAGAAAAAGGAGACAAGAAATGGCAGAGAGATTCATACAACTTTCGGCTATGATACCTGGCTTGAAGAAGATAGACAAGGTTTCTGTACTTGGTGAAGCTATTAATTACGTGAAAGAACTTAAAGAACGCATATCAATGCTGGAGCAACAATATTATGAGAGGAATAAAAGTACCAAGTCCATAATCTCTATTAGAAAATTTCAATCTCATCCACTTAATGATAATTTGGATTCCAATCATGTGCTCCCTGAAGTAGAGGCCATTGGCATAGAATCAGAGAAGGAATTATTACTTATTAAAATCAACTGTGAGAAACGTGAAGGCATTTTGTTCAAACTATTGTCTATGCTGGAAAATATGCACCTCTATGTTTCCACCAGTAGTGTGCTTCCATTTGGGAAAAATACCCTCAACATTACCATCATTGCTAAGATGGGTGAGGAATACAGGATAACAATAGAAGAATTGATGACAAAGTTGAAACAAGATCTTTTGAAGTTATATGACATGTAA 690 0.3623 MENWFSNMAMKGTDNSFNEKHPTLIGHCSNSVPHAANATHGKNKRVRSSWEIQGHIMSERKRRQEMAERFIQLSAMIPGLKKIDKVSVLGEAINYVKELKERISMLEQQYYERNKSTKSIISIRKFQSHPLNDNLDSNHVLPEVEAIGIESEKELLLIKINCEKREGILFKLLSMLENMHLYVSTSSVLPFGKNTLNITIIAKMGEEYRITIEELMTKLKQDLLKLYDM* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3728 229 Coils Coil 89 109 - -
Mtr2g3728 229 Pfam Helix-loop-helix DNA-binding domain 55 99 IPR011598 GO:0046983
Mtr2g3728 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
Mtr2g3728 229 SMART finulus 56 105 IPR011598 GO:0046983
Mtr2g3728 229 PANTHER BHLH TRANSCRIPTION FACTOR 1 229 - -
Mtr2g3728 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 114 IPR036638 GO:0046983
Mtr2g3728 229 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 229 - -
Mtr2g3728 229 Gene3D - 39 116 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3728 Mtr-Chr2 51355985 51359270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3728 47 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.572 8.62e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3728 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3728 - - cam:101501845 266.159