Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3727 ATGGAGGAGAATTCATGGGGGAATTGGTCTTACCAATTGCACCATGATTCTTTGCCTTTGTCATCATCAAAGGCTGACCACGGGTCGAATTCAAGGAAGACTCGAAGCGCTTCTGAGACGCTAGATCACATAATAACAGAGAGGAACAGGAGACGTGAACTTACAAGAAAGTTCATAGAACTTTCAGCATTTATACCTGGACTGAAGAAGACGGACAAGGTTCATGTACTAGGAGAAGCTGTCAAGTACGTGGCACAACTTCAAGAACGTGTGAAAGAGCTAGAAGAAGACATCAAGAAGAAAGGTGCGGGATCATTGATCACCATAACAAGATCTCATCTCCTTGATGACAATGACACTGCAATGGGTGAAATGAACACTAAAGAATGTTATCGGCACAATGAAACATTTCCAGAGCTTGAACTTCAAATTCTTCATCTCTCCATAACAACTACCAATGTCTTGCCATTTGGAAATACTCTTAACATCACTATTATTGCCCAGATGGGTGATAAATACAAGTTGACCGTGGAGGATCTAGTGAAAAAACTAAGAGTAGTGGCTACGTTGCAGGCATGTGATGATGTGCAACAGTGA 597 0.4171 MEENSWGNWSYQLHHDSLPLSSSKADHGSNSRKTRSASETLDHIITERNRRRELTRKFIELSAFIPGLKKTDKVHVLGEAVKYVAQLQERVKELEEDIKKKGAGSLITITRSHLLDDNDTAMGEMNTKECYRHNETFPELELQILHLSITTTNVLPFGNTLNITIIAQMGDKYKLTVEDLVKKLRVVATLQACDDVQQ* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3727 198 MobiDBLite consensus disorder prediction 28 43 - -
Mtr2g3727 198 Pfam Helix-loop-helix DNA-binding domain 43 88 IPR011598 GO:0046983
Mtr2g3727 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Mtr2g3727 198 SMART finulus 44 93 IPR011598 GO:0046983
Mtr2g3727 198 PANTHER BHLH TRANSCRIPTION FACTOR 141 195 - -
Mtr2g3727 198 PANTHER BHLH TRANSCRIPTION FACTOR 13 145 - -
Mtr2g3727 198 MobiDBLite consensus disorder prediction 20 43 - -
Mtr2g3727 198 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 13 145 - -
Mtr2g3727 198 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 141 195 - -
Mtr2g3727 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 105 IPR036638 GO:0046983
Mtr2g3727 198 Coils Coil 77 104 - -
Mtr2g3727 198 Gene3D - 26 102 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3727 Mtr-Chr2 51342718 51344035 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3727 34 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.889 1.42e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3727 HLH 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3727 - - mtr:MTR_2g104590 358.221