Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3726 ATGTGGAGTTCAAGCAGAGTCGTCTCCGAAGAAGAACAAACTGAATCTTCTTCTTTCTCAACTTCTCTCTTTAATTTCTCTTCTGGAAACCCTAGAATCGAAGAAACTCGCGGCCTCATGCATGTCTTCCCCGAACAAACCCCTCCTTCTCTTCCGGTTGGACGGAAGCCATTGGCGTGTGTTTTGGGAGTACCAAATCACATGACATATGCTGATTTTTGTCAGTTTTGTGGTTCTTTTATTCAGCATATTCTTGAAATGCGTATTGTTAGAATGGAATCCATGGAAGATCGTTACAGTGTTTTGATTCGCTTCGATGAACAAGATTCTACGGATGCTTTCTATACTCATTACAATGGTCGACGTTTTTCCTCTCTAGAGGTTGAGGTGTGTCGTGTTGTTTTCACGTTAGATGTGCAGTATACTGGATCAATTGAACACGCACAACCATCCAATGCTACTTCAACTGAACAGCCTACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACGAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGCTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAACAAGCTGAAAATTCTATATGTTTCGTTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAGACGCAGCATTGCTATTCCTTAGAAGTGGAAACTAAGCGTGTCTGGGATTATGTCGGAGACAACTATGTCCATAGACTTATTCAGTCCAAAACTGACGGGAAGTTAGTTGAGCTGAACTCTCACTGTGTGCATGCAGACAGTGGCAGCTGTGGAGATAATGCCATGAGAGAGGCTATACTTAATAGTAAAGTTCAAGCGATTGTCAATGAATACAATGAATTGCTTGCTACACAACTTGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACTGAAGGAAAAATTTCCGTAGCAGTTCAGAAGGCTGTCAGTCTCAAACAGCATAAGATTCATGCGAAGATTGATCGATGTAACAAAGAGAAGAAGTTTCTGGATGAGCTTAATGACAATCTTTTGAAAAATGAGGAGATCTGGAAAGCCAAGTTACTTGAGATTGAAGAGAGGGAGAAAAAGGCTTTAAAGCTGACTACTGATAGGGTAACGGACCTAGAAAAGCAGCTTAGTAACCTCATGGTTTGTCTTGAGGGTGGGAAGACGGAAGAACACCCGCCATTGTCAAATGCAAATGACGGAACTGTCTCTGTCATTTCAAAAGTATCCTCAGTCAAATTGTAG 1371 0.4085 MWSSSRVVSEEEQTESSSFSTSLFNFSSGNPRIEETRGLMHVFPEQTPPSLPVGRKPLACVLGVPNHMTYADFCQFCGSFIQHILEMRIVRMESMEDRYSVLIRFDEQDSTDAFYTHYNGRRFSSLEVEVCRVVFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAENSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADSGSCGDNAMREAILNSKVQAIVNEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVSLKQHKIHAKIDRCNKEKKFLDELNDNLLKNEEIWKAKLLEIEEREKKALKLTTDRVTDLEKQLSNLMVCLEGGKTEEHPPLSNANDGTVSVISKVSSVKL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3726 456 SMART ring_2 161 200 IPR001841 -
Mtr2g3726 456 SUPERFAMILY RING/U-box 177 276 - -
Mtr2g3726 456 SMART Zf_UBP_1 211 260 IPR001607 GO:0008270
Mtr2g3726 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 203 IPR013083 -
Mtr2g3726 456 CDD RRM_BRAP2_like 60 140 - -
Mtr2g3726 456 Pfam Zn-finger in ubiquitin-hydrolases and other protein 212 271 IPR001607 GO:0008270
Mtr2g3726 456 Coils Coil 366 386 - -
Mtr2g3726 456 Pfam Ring finger domain 160 201 IPR001841 -
Mtr2g3726 456 Coils Coil 322 342 - -
Mtr2g3726 456 Pfam BRCA1-associated protein 2 52 148 IPR011422 -
Mtr2g3726 456 PANTHER BRCA1-ASSOCIATED PROTEIN 7 450 - -
Mtr2g3726 456 CDD RING-H2_BRAP2 159 202 - -
Mtr2g3726 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 282 IPR013083 -
Mtr2g3726 456 ProSiteProfiles Zinc finger RING-type profile. 161 201 IPR001841 -
Mtr2g3726 456 ProSiteProfiles Zinc finger UBP-type profile. 195 288 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3726 Mtr-Chr2 51336929 51341888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3726 157 201 C3H Transcription Factor Family AT1G72220 48.936 2.22e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3726 K10632 - gmx:100794688 745.732