Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3657 ATGGATTCAGAAGCTGAAACTTCACAAACCCATATGAGGATTAAGACTCAGCTATGCAGAAGATTCATGCAAGGAACGTGTCCTCTTGTTGCACCCCAATGCAACTATGCACATGGCTACCACGACCTCAGAACAGCAACAGGACCAAGACTATGTAGAATGTTCATGCACACCAGACATTGTAGCTATGGAAACAACTGTCGTTTCCTTCATGCAACTCCTCCTCTACCTCTTCATCATGTTCATCCTCAGCAGCAGCAGCATGAGAACATCAACTTCTCTTTTCCACAACCACAACCAGGGATAATGCAAAATACAGAATGCAGGATCATGCAAACTTCTGCTGCTGCTACAACTAATGGCCACTCTTCTGCACAAAACAACACAACGCAATCACAAACTTTTAGCTCTACTCCTGCTAGAAATACCTCAGCCATCACAGTGGCAACTACCTCTTTACATAAGAATGGACCCTATGCTGGTAAATCCTTATCTGACATAAACACAATGCAAAGGGTCATTCGTCTCTATGCTGATTGGATTTAA 546 0.4322 MDSEAETSQTHMRIKTQLCRRFMQGTCPLVAPQCNYAHGYHDLRTATGPRLCRMFMHTRHCSYGNNCRFLHATPPLPLHHVHPQQQQHENINFSFPQPQPGIMQNTECRIMQTSAAATTNGHSSAQNNTTQSQTFSSTPARNTSAITVATTSLHKNGPYAGKSLSDINTMQRVIRLYADWI* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3657 181 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Mtr2g3657 181 SUPERFAMILY CCCH zinc finger 49 72 IPR036855 GO:0046872
Mtr2g3657 181 Gene3D - 6 46 - -
Mtr2g3657 181 Gene3D - 49 75 - -
Mtr2g3657 181 MobiDBLite consensus disorder prediction 116 142 - -
Mtr2g3657 181 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 15 39 IPR000571 GO:0046872
Mtr2g3657 181 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 71 IPR000571 GO:0046872
Mtr2g3657 181 PANTHER CCCH ZINC FINGER/TIS11-RELATED 3 180 IPR045877 GO:0003729
Mtr2g3657 181 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 3 180 - -
Mtr2g3657 181 ProSiteProfiles Zinc finger C3H1-type profile. 13 41 IPR000571 GO:0046872
Mtr2g3657 181 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Mtr2g3657 181 SMART c3hfinal6 13 40 IPR000571 GO:0046872
Mtr2g3657 181 SUPERFAMILY CCCH zinc finger 10 45 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3657 15 72 C3H Transcription Factor Family AT1G68200 39.062 7.27e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr2g3657 zf-CCCH 5.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3657 - K18753 mtr:MTR_2g103290 362.844