Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3629 ATGAAGAATAGTATTTGCAAGTACGTGAAAGTTGCGGTTGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAGTTTATGAATGTTATGACAATCTTCTCACTGCATTGAATACCATGTTTTCTACTAATTGCTTCACTATTCGTAACGATTTGATGAATGAGAAGAAATTCATGGATTCTAGAAAAAATACGAATGAATATTTGGCTACCTATGAGGATAAAGATGGTGACTGGATGTTGCTTGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGTAAGAGGATAAGGCTTATGATTAGCTCGGGGGACAATATTGATTTTGGTTCCAGATGTACGGCCTCCAGTGAGAAGAATAATTATAGCTAG 372 0.3683 MKNSICKYVKVAVDGAPYLRKVDLEVYECYDNLLTALNTMFSTNCFTIRNDLMNEKKFMDSRKNTNEYLATYEDKDGDWMLLGDVPWKMFVESCKRIRLMISSGDNIDFGSRCTASSEKNNYS* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3629 123 ProSiteProfiles PB1 domain profile. 6 104 IPR000270 GO:0005515
Mtr2g3629 123 Pfam AUX/IAA family 4 103 IPR033389 -
Mtr2g3629 123 Gene3D - 2 111 - -
Mtr2g3629 123 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 5 103 - -
Mtr2g3629 123 SUPERFAMILY CAD & PB1 domains 7 101 - -
Mtr2g3629 123 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 103 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3629 Mtr-Chr2 50269282 50270453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3629 10 97 B3 DNA Binding Superfamily AT1G59750 29.545 7.79e-08 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr2g3629 AUX_IAA 1.2e-40 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3629 K14484 - gmx:100500488 145.976