Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3627 ATGGCAAAGGGTTGTTCCACTACCAGTAACAACTATGAAGCGGCTAGAGAACAAAGACTTGTGGAAAACAAGAAGAGGTTTGAGGATTTAGGAATCTCAAAAATTTCCAAAACATTGACTGAAATCGCAAGTCCAGCAAAGAAATCCACGAATCGTCTTTTCAGACCAAAATCAAAGACTAATGTTGTTCTGGAACCTAGACGCTCTTCTCGTGCCAGAAACTCAGTTCCTTCGTATGCTGAAGAGTTTGGCACAGACCTTCCACAGTTGCGGAGGAGGGCAAGGTCAAGTTCATCATGGGGAAGTTACGCTTATGCTGCAAGGCCACTGGATGAAATCAAAGTAGCTACAGCTCAAGAAAGAAAGCGTGCTTGGGATGCGGCAGAGGCACTCCAAATCAATTTGCAGTCTTCGAATCCAATATTTATCAAGTCAATGCTCCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTTCCCAGTAGATTTTGTGTGGAACATCTTCCAAAGACAGATTATACAATGGTTTTAGAGGATGAAAAAGGCTTGGAATATGATGCTGTTTACCTTGCCCGTAAAACTGGGCTTAGTGGTGGCTGGAGAGGATTTGCATTGGAACATAAATTGGACGATGGTGATGCAGTAGTTTTTGAATTGGTTGAAGCAGCACGATTTAAGGTTTATATTGTTAGAGCATTTGAAAATATAGATGAAGAGGAAGAAAAAGAAGAAAGCGATGCTTTGGTGGAAGATGGAAATATGTGCACATCCAAAACAATAAAAAAATCTGAAACTGTGAAACCAAAGGAAGCTACAAAGAAAACTAGAATGCAAAAGGTATCTAAAGTACCTACACATGAGCCAAAGTCTGAAACTGTTAAATCAGAGGAAACTTCTAGGACAACAAGATCTTCTCACAAAAAGCAAAAGATATCTGATGTATCTACTGCAATTGAGCCAAAAGAGGATGCACACCTAGAAACAGTGAAACCAGAGGCAGCTACAAAGTTGCCAAACAAGAAAAGGAAGGCAAAAGAAGGTGATGTATCTAAGAAGATTCTTTTGGAAGATAATGCTAAAGCAATGAAGACTGACTCAGAGAGGAAGGAAGAACCTGTTGAGGATGTTGATGTTGAGCTAAAGAAAGTTAAGCTAGATGATAAAGCAAGCAAACCTGCTGCAGAAAAACCTCGGAAAATTCGAGCTCCAAAGTTTTTCAGAAAGAGAGGTTAG 1233 0.4015 MAKGCSTTSNNYEAAREQRLVENKKRFEDLGISKISKTLTEIASPAKKSTNRLFRPKSKTNVVLEPRRSSRARNSVPSYAEEFGTDLPQLRRRARSSSSWGSYAYAARPLDEIKVATAQERKRAWDAAEALQINLQSSNPIFIKSMLRSHVYSCFWLGLPSRFCVEHLPKTDYTMVLEDEKGLEYDAVYLARKTGLSGGWRGFALEHKLDDGDAVVFELVEAARFKVYIVRAFENIDEEEEKEESDALVEDGNMCTSKTIKKSETVKPKEATKKTRMQKVSKVPTHEPKSETVKSEETSRTTRSSHKKQKISDVSTAIEPKEDAHLETVKPEAATKLPNKKRKAKEGDVSKKILLEDNAKAMKTDSERKEEPVEDVDVELKKVKLDDKASKPAAEKPRKIRAPKFFRKRG* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3627 410 SMART B3_2 142 233 IPR003340 GO:0003677
Mtr2g3627 410 Pfam B3 DNA binding domain 142 231 IPR003340 GO:0003677
Mtr2g3627 410 MobiDBLite consensus disorder prediction 262 351 - -
Mtr2g3627 410 MobiDBLite consensus disorder prediction 385 410 - -
Mtr2g3627 410 MobiDBLite consensus disorder prediction 385 400 - -
Mtr2g3627 410 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 4 245 - -
Mtr2g3627 410 ProSiteProfiles B3 DNA-binding domain profile. 142 233 IPR003340 GO:0003677
Mtr2g3627 410 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 245 IPR044837 -
Mtr2g3627 410 Gene3D - 115 236 IPR015300 -
Mtr2g3627 410 SUPERFAMILY DNA-binding pseudobarrel domain 135 231 IPR015300 -
Mtr2g3627 410 MobiDBLite consensus disorder prediction 260 351 - -
Mtr2g3627 410 CDD B3_DNA 140 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3627 Mtr-Chr2 50247569 50252581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3627 12 237 B3 DNA Binding Superfamily AT5G58280 47.059 5.96e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr2g3627 B3 6.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3627 - - mtr:MTR_2g102450 587.415