Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3589 ATGACACAACCATTGCTTTTGCTCCTTAAAAAACACAATACCCTTCTTTCTTCACCAACGTTGTCAATGTGTGCAGACATGTCTAATAATAATCCTCCTTCTACTTCTAAAGCCAAAGACTTCTTTCCCTCTCCAGCTCTCTCTCTTAGCCTAGCGGGGATATTTCGGCATGGTGGCGGTGCGGCGGCGGAGGGTGAAGGAGGGAGTATTAGTAACATGGAGGTGGAAGAAGGGGAGGAAGGGAGTACAATAGGAGGTGAGCGTGTGGAGGAAATTAGCAGTGAGTATTCAGGTCCAGCTAAATCCAAATCAATAGATGAATATGAAGGAGATGAACTTGAAGATGATGAAGGTGAAGATGATGAAGGTGATGGTGATGGTGATGGTGATGGTGTTAATAAGAACAAGAAGAAGAAAAGGAAGAAATATCACAGGCACACTTCTGAACAGATCAGAGTCATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAAAGGCAACAACTTAGCAAGCAATTAGGACTTGCTCCTAGGCAAGTCAAATTTTGGTTCCAAAATCGTCGTACCCAAATCAAGGCAATACAAGAGCGACATGAAAATTCATTGTTGAAATCAGAAATAGAGAAACTAAGGGAGAAAAATAAGACCCTACGAGAGACCATAAATAAGGCTTGTTGCCCCAATTGTGGGGTCCCCACCACAAATAGAGATGGTACCATGGCAACTGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAGGCTGAGAGCAGCTTTAGGGAAATATGCATCAGGGACAATGTCACCTTCATGTTCCACTAGCCATGACCAAGAGAATATTAAAAGCTCTTTGGATTTTTATACTGGAATTTTTTGTCTTGATGAGTCAAGAATAATGGATGTAGTAAACCAAGCAATGGAGGAGCTTATCAAGATGGCTACAATGGGTGAACCAATGTGGTTACGTAGCTTAGAGACCGGTCGCGAAATACTTAACTATGATGAATATATGAAGGAGTTTGCAGATGAAAATTCAGACCATGGAAGACCAAAGAGATCCATTGAAGCTTCAAGAGATACAGGAGTTGTTTTTGCAGATCTTCCTCGGATTGTCCAATGCTTTCTTGATGCTAATCAATGGAAGGAAATGTTTCCATGTTTAATATCTAAGGCAGCAACAGTTGACACTATATGCAAAGGAGAAGGTTCTAACAAGAATGGTGCAGTGCAACTGATGTTTGCTGAGTTGCAAATGTTAACACCAATGGTTCCAACTAGAGAAGTGTATTTTGTCAGATACTGCAAACGGTTGAGTGGTGAAAAATGGGCTATTGTTGATGTGTCCATAGACAAAGTAGAAGACAACATTGACAAGTCCTTAGTGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGATAAGTCAAATGGACATTGCAAAGTAGTATGGGTGGAGCATTTGGAGTGCCAAAAGAGTATAGTTCATTCAATGTATCGCACCATTGTCAACAGCGGCCTAGCTTTTGGGGCAAGGCATTGGATTGCGACCCTTCAACTTCAATGCGAACGTCTAGTTTTCTTCATGGCAACAAACGTTCCCATGAAGGATTCAACCGGAGTTGCCACATTGGCCGGAAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGTCAAGCAATTAGTGCTTCAAGCTTCCATACATGGACTAAGGTTACAAGTAAAACTGGAGAAGACATAAGGATTAGCTCTAGAAAGAACTTGAATGATCCTAGTGAACCTCTTGGATTGATAGTTTGTGCAGTTTCTTCTATATGGTTGCCTATATCTCCTAATGTTTTGTTTGATTTCTTGAGGGACGAAACTCGTCGAACTGAGTGGGATATAATGTCTAATGGTGGGACAGTGCAATCCATTGCAAATTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAACTATCCAAACAATTAAATCAAAAGAAAACAATATGTGGATACTGCAAGATAGCTGCACAAATTCTTACGAGTCAATGGTGGTATATGCACCTGCGGATATTACTGGTATTCAATCTGTGATGACCGGATGCGACTCGAGCAATCTTGCCATACTACCCTCAGGATTTTCAATTGTTTCTGATGGTTTGGAGTCAAGGCAAATGGTAATTACTTCGAGGCGGGAAGAGAAAAATACAGAAGGTGGATCTTTGTTTACAATAGCATTCCAAATCCTTACAAATGCTTCTCCTACAGCCAAATTAACTATGGAGTCTGTGGACTCTATGAACTCTCTTGTATCATGTACATTGAGACACATCAAAACAAGTCTAAATTGCGAAGATGGTTAG 2385 0.4096 MTQPLLLLLKKHNTLLSSPTLSMCADMSNNNPPSTSKAKDFFPSPALSLSLAGIFRHGGGAAAEGEGGSISNMEVEEGEEGSTIGGERVEEISSEYSGPAKSKSIDEYEGDELEDDEGEDDEGDGDGDGDGVNKNKKKKRKKYHRHTSEQIRVMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLREKNKTLRETINKACCPNCGVPTTNRDGTMATEEQQLRIENAKLKAEVERLRAALGKYASGTMSPSCSTSHDQENIKSSLDFYTGIFCLDESRIMDVVNQAMEELIKMATMGEPMWLRSLETGREILNYDEYMKEFADENSDHGRPKRSIEASRDTGVVFADLPRIVQCFLDANQWKEMFPCLISKAATVDTICKGEGSNKNGAVQLMFAELQMLTPMVPTREVYFVRYCKRLSGEKWAIVDVSIDKVEDNIDKSLVKCRKRPSGCIIEDKSNGHCKVVWVEHLECQKSIVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCQAISASSFHTWTKVTSKTGEDIRISSRKNLNDPSEPLGLIVCAVSSIWLPISPNVLFDFLRDETRRTEWDIMSNGGTVQSIANLAKGQDRGNAVTIQTIKSKENNMWILQDSCTNSYESMVVYAPADITGIQSVMTGCDSSNLAILPSGFSIVSDGLESRQMVITSRREEKNTEGGSLFTIAFQILTNASPTAKLTMESVDSMNSLVSCTLRHIKTSLNCEDG* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3589 794 CDD homeodomain 144 195 IPR001356 GO:0003677
Mtr2g3589 794 MobiDBLite consensus disorder prediction 60 150 - -
Mtr2g3589 794 ProSiteProfiles START domain profile. 300 536 IPR002913 GO:0008289
Mtr2g3589 794 CDD START_ArGLABRA2_like 305 532 - -
Mtr2g3589 794 Coils Coil 247 267 - -
Mtr2g3589 794 SUPERFAMILY Homeodomain-like 128 198 IPR009057 -
Mtr2g3589 794 SMART START_1 309 533 IPR002913 GO:0008289
Mtr2g3589 794 Pfam START domain 311 533 IPR002913 GO:0008289
Mtr2g3589 794 Coils Coil 196 226 - -
Mtr2g3589 794 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Mtr2g3589 794 Pfam Homeodomain 140 195 IPR001356 GO:0003677
Mtr2g3589 794 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 41 791 - -
Mtr2g3589 794 MobiDBLite consensus disorder prediction 109 127 - -
Mtr2g3589 794 Gene3D - 309 528 IPR023393 -
Mtr2g3589 794 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 791 IPR042160 -
Mtr2g3589 794 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Mtr2g3589 794 SUPERFAMILY Bet v1-like 304 533 - -
Mtr2g3589 794 Gene3D - 129 209 - -
Mtr2g3589 794 SUPERFAMILY Bet v1-like 562 786 - -
Mtr2g3589 794 SMART HOX_1 139 201 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3589 Mtr-Chr2 49877015 49883950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3589 92 793 Homeobox Transcription Factor Family AT1G79840 63.791 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr2g3589 START 1.2e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3589 K09338 - gmx:100808292 1239.56