Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3578 ATGTCTACACCATTAGAACATGATTACATAGGTTTAGCAAATAATCCTTCAATGGACAAAACATCTTCATCTCTCAACTTCAAGGAAACTGAGCTCAGACTAGGCTTACCTGGTTGTGAATCTCCTGATAGAAAATCAGTTTCTGCTGCTGGTGCTGGTGGTGGAGTCTCTTTCTTTGCCAACAAAGATTTGAAGAGCATTAATGTTTGTTCTCCTTTGAAGAACCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTGATGCTATTGATGAGTCTTCTAAGAAATGGAGTTTCTCTATGAATGATGGATCTGAAGGAGGTAGTTTGTTCTCGCCAAGAGGAGGGAATGTTGGAAAACCTCTTGCTGGTTTAGAGACTCAAACTAATATTCAAAAGATTAATACAAATGCAACAAAAAACATCAAAGAGGTTCTTCATCAATCTGTACATGAAAAGAATAAACAGGTTTCTGGAACAAATGAGCATGCTAATGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCGTTTCGAAAGAACACGATGGCGTCAAATTTGACAAAGAACAATGATGAAGCTGAGGGAAAACCAGAATTTGACTGTCTCTATGTAAAAGTGAGTATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAGACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGTCAATGCAATTCGCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAGTATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGCGACGTTCCTTGGGGGATGTTCGCTGACTCGTGTAGGAGACTACGGATCATGAAAGGCTCTGATGCAATTGGGCTAGCTCCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAG 981 0.4098 MSTPLEHDYIGLANNPSMDKTSSSLNFKETELRLGLPGCESPDRKSVSAAGAGGGVSFFANKDLKSINVCSPLKNLVASVGAKRGFSDAIDESSKKWSFSMNDGSEGGSLFSPRGGNVGKPLAGLETQTNIQKINTNATKNIKEVLHQSVHEKNKQVSGTNEHANAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPEFDCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSDAIGLAPRAMEKSRSQN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3578 326 ProSiteProfiles PB1 domain profile. 206 308 IPR000270 GO:0005515
Mtr2g3578 326 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 318 IPR003311 GO:0005634|GO:0006355
Mtr2g3578 326 Pfam AUX/IAA family 29 317 IPR033389 -
Mtr2g3578 326 Gene3D - 201 319 - -
Mtr2g3578 326 PANTHER AUXIN-RESPONSIVE PROTEIN 17 318 - -
Mtr2g3578 326 SUPERFAMILY CAD & PB1 domains 206 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3578 Mtr-Chr2 49748168 49750951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3578 210 316 B3 DNA Binding Superfamily AT4G23980 28.972 3.54e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mtr2g3578 AUX_IAA 2e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3578 K14484 - gmx:100804423 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3578 2 49748168 49750951 Mtr2g3578 2 49748168 49750951 ECH