Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3565 ATGAAAGAAATAAAAAACTATTTCTCACCTTCAAATCCAAACTCTTCAAAACCTAAAAAAACAGAGACAAAGAAACAGAGCAAGGTGAAGAAAAACAGAGACTGCAACAGCCACCCGGTTTATCACGGCGTTCGAATGCGAAGCTGGGGAAAATGGGTATCGGAAATCCGCGAACCTCGCAAAAAATCACGAATCTGGCTTGGAACTTACGCTACTCCTGAAATGGCAGCTAGAGCGCATGATGTTGCTGCTTTGAGTATAAAGGGTCATTCAGCAATTCTTAACTTCCCCGAAATAGCGCACATGCTTCCAAGACCAACAACGTTGTCTCCACGTGACATTCAAGTTGCAGCTGCAGAAGCTGCTGCCATGGTGGAATTTGATTCTCAAATATTGCGCTCAACAATCTCACTCAGCTCTGAAGTCTCTGACTCACCTTCATATTCATCAGAGTCTACAGAGCTTAGTGAGATTGTTGAGCTTCCTAATATAGAAGAGAGTTATAACTCGGTTGAGGTGAGAAGTGAGTTTATGTTGATTGACTCGGTTGAAAGTTGGTTGTATCCGTCAGTAGAAAGTTTATGTGACATGATGGTTGAAGAACAGAGTTTTTTGTTATAA 621 0.4171 MKEIKNYFSPSNPNSSKPKKTETKKQSKVKKNRDCNSHPVYHGVRMRSWGKWVSEIREPRKKSRIWLGTYATPEMAARAHDVAALSIKGHSAILNFPEIAHMLPRPTTLSPRDIQVAAAEAAAMVEFDSQILRSTISLSSEVSDSPSYSSESTELSEIVELPNIEESYNSVEVRSEFMLIDSVESWLYPSVESLCDMMVEEQSFLL* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3565 206 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Mtr2g3565 206 MobiDBLite consensus disorder prediction 1 36 - -
Mtr2g3565 206 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Mtr2g3565 206 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Mtr2g3565 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 202 - -
Mtr2g3565 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 202 - -
Mtr2g3565 206 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Mtr2g3565 206 Pfam AP2 domain 39 90 IPR001471 GO:0003700|GO:0006355
Mtr2g3565 206 MobiDBLite consensus disorder prediction 18 36 - -
Mtr2g3565 206 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Mtr2g3565 206 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Mtr2g3565 206 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3565 Mtr-Chr2 49675174 49676027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3565 9 189 AP2-EREBP Transcription Factor Family AT5G11590 55.497 2.66e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr2g3565 AP2 5.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3565 K09286 - gmx:100784419 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3565 2 49675174 49676027 Mtr2g3565 2 49675174 49676027 ECH