Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3555 ATGTCTTGTAAAGATGGTAAAGGTGTTATGGATAATGGAAAATACGTTCGTTATACACCTGAACAAGTTGAAGCTCTTGAGAGGCTTTATCATGATTGTCCTAAGCCAAGCAGTATTCGTCGTCAACAGCTTATTCGAGAGTGTCCTATTCTCTCTCATATTGAACCTAAACAGATCAAAGTTTGGTTCCAAAATAGAAGATGTAGGGAGAAGCAGAGAAAAGAGGCTTCAAGGTTGCAAGCTGTGAATAGGAAGTTGAGTGCTATGAATAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAACAAGTATCTCATTTGGTGTATGAAAATGGCTACTTTCGCCAACATACTCAAAATACTAATCTGGCAACCAAAGATACAAGCTGTGATTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAGCCCAGCATCCGCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAGGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGAATCTATTGGAATCATTGCGATTTCTCATGGTTGCCATGGTGTGGCGGCAAGAGCATGTGGCCTAGTGGGGCTAGAACCTACAAGGGTTGCAGAAATCCTCAAAGATCGGCCCTCGTGGTATCGTGATTGCCGAGCTGTGGATATTCTGAACGTGCTTCCCACAGCCAATGGTGGAACCATAGAGCTGCTTTACATGCAGCTATATGCGCCAACTACATTGGCTCCTGCTCGAGACTTATGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATATGTGAGAGGTCTCTTAAAAACACACAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTCAGAGCTGAGATGCTGCCCAGTGGGTACCTGATAAGGCCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTTCCCGAGGTACTGCGTCCACTCTATGAATCATCAACAATGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACCTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAACGTCACTGGATGGGGTAGACGACCAGCAGCACTTCGAGCACTTGGCCAAAGACTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGACGATGTTACTATTCTAGTGAATTCATCCCCTGACAAATTAATGGGTCTGAATCTTTCATTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTCTTATGTGCTAAAGCTTCAATGCTGTTACAAAATGTGCCTCCGGCCATTCTACTAAGGTTTTTACGGGAGCATAGATCGGAGTGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATCAAAGCTGGTCCTTGTAGTTTCTCAGGATCTCGGGTTGGAAATTATGGGGGCCAAGTAATTCTTCCTCTAGCCCACACTATTGAGCACGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCCCATTCTCCCGAAGACGCGATAATGCCTAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGTACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGTATAATTCCTCTTGATTCTGGAAAGGAAGTGGCCAACAACCCAAATCGCACCCTTGACCTGACATCTGCCCTTGATATTGGTCCCGCTGGAAACAAAGCTTCTAATGATTATTCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCTTTTGAAAGTCATATGCAAGACCATGTAGCATCTATGGCACGGCAGTATGTTCGCAGCATTATATCGTCTGTCCAAAGGGTAGCATTGGCACTTTCACCTTCTAATTTGAATTCACAAGGTGGGCTCAGGACACCACTGGGTACTCCTGAAGCTCAAACACTTGCTCGTTGGATCAGCAACAGTTATAGGTGCTTCTTGGGTGCTGAGCTACTTAAATCTAATAATGAGGGGAGCGAATCATTACTCAAGTCCTTGTGGCATCACACTGATGCAATACTCTGCTGCACTCTAAAGGCATTGCCCGTGTTCACTTTTGCCAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCTCTGCAGGATATAGCATTGGAGAAAATATTTGATGACCATGGCCGAAAGATTCTGTGCTCGGAATTTCCTCTAATTATACAACAGGGTTTTGCATGCCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGAGACCTATTTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2511 0.4504 MSCKDGKGVMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTNLATKDTSCDSAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIIAISHGCHGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDILNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKAGPCSFSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDAIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEVANNPNRTLDLTSALDIGPAGNKASNDYSGNSGCMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSNLNSQGGLRTPLGTPEAQTLARWISNSYRCFLGAELLKSNNEGSESLLKSLWHHTDAILCCTLKALPVFTFANQAGLDMLETTLVALQDIALEKIFDDHGRKILCSEFPLIIQQGFACLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCICFMFVNWSFV* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3555 836 CDD START_ArGLABRA2_like 152 367 - -
Mtr2g3555 836 SMART HOX_1 11 77 IPR001356 GO:0003677
Mtr2g3555 836 ProSiteProfiles START domain profile. 148 349 IPR002913 GO:0008289
Mtr2g3555 836 CDD homeodomain 14 74 IPR001356 GO:0003677
Mtr2g3555 836 SUPERFAMILY Bet v1-like 157 366 - -
Mtr2g3555 836 Pfam START domain 158 366 IPR002913 GO:0008289
Mtr2g3555 836 CDD bZIP 66 105 - -
Mtr2g3555 836 SMART START_1 157 367 IPR002913 GO:0008289
Mtr2g3555 836 Gene3D - 194 370 IPR023393 -
Mtr2g3555 836 MobiDBLite consensus disorder prediction 125 145 - -
Mtr2g3555 836 Pfam Homeodomain 14 72 IPR001356 GO:0003677
Mtr2g3555 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 836 IPR044830 GO:0003700
Mtr2g3555 836 Coils Coil 69 103 - -
Mtr2g3555 836 SUPERFAMILY Homeodomain-like 14 77 IPR009057 -
Mtr2g3555 836 MobiDBLite consensus disorder prediction 125 151 - -
Mtr2g3555 836 Pfam MEKHLA domain 693 835 IPR013978 -
Mtr2g3555 836 Gene3D - 7 80 - -
Mtr2g3555 836 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 836 - -
Mtr2g3555 836 ProSiteProfiles 'Homeobox' domain profile. 9 73 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3555 Mtr-Chr2 49617454 49625398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3555 1 788 Homeobox Transcription Factor Family AT1G52150 84.956 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr2g3555 START 1.2e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3555 K09338 - zju:107428556 1566.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3555 2 49617454 49625398 Mtr2g3555 2 49617454 49625398 ECH
Mtr2g3555 2 49617454 49625398 Mtr8g0371 8 4231285 4238446 PCT