Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3548 ATGACTCGGCGTTGCTCTCACTGCAGCAACAACGGCCATAACTCACGGACATGTCCGTCGAGAACAGCCGCCGCCGGCGGGGTCAAGCTTTTTGGTGTTAGATTAACCGATGGATCAATCATCAAGAAAAGTGCGAGTATGGGAAACCTAAACCTCGCCGCTCTTCATCATTCTTCTTCTTCTTCATCGCTGAACCCCGGTTCATCGTTGAATCCCGGCTCACCTTGTTTTGAACCGCCGCATGACCCGGATGGTTATTTGTCTGATGACCCGGTTCATGCTTCTTCTGCTTTCGCTACCCGCCGCAGCGAAAGAAAAAAAGGTGTTCCATGGACTGAGGAAGAACATAGATTGTTCTTGGTTGGTCTCCAAAAGCTAGGCAAAGGAGACTGGCGAGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAAAAGTACTTTATCCGACAGAGTAATGCTACCAGGAGGAAGAGACGTTCCAGTCTTTTCGACATGGCTCCTGATGTGTGTCCAGATTCAACTTCGATGCCAGAAGAGCAAGTACTACTTCCACCTTCTGAGAACTCACAACCTTGTAATGGAAAATCACAACCATCACTAAATCTGTCTCTCAAGTCAGAATATGAACCAATGGAAACTACATCAGAAGAAAATATAGAAGAGGCCAATGAGACTACAATGGGATCAAATGGATTCACACCAATGACTCAAGGATTCTTCCCACCTTATTTACCTGCCTCATTTTCCATATGGCCATCAATTGGAGCTCCCTTTGAAGAAGTCAACAGAGGAGAGACATCACATCATCAGGTCCTCAAGCCAATACCAGTCATTCCAAAGGAACCTGTCAATGTTGATGAGCTTGTGGGAATGTCTCATCTGAGCATTGGGGAAACACGGGTTCTTGATAGAGAGCCTTCCCCCCTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCTGATCTAAACAGTGGCAAGAACAACGCCATTCAAGCGGTTTGA 1062 0.467 MTRRCSHCSNNGHNSRTCPSRTAAAGGVKLFGVRLTDGSIIKKSASMGNLNLAALHHSSSSSSLNPGSSLNPGSPCFEPPHDPDGYLSDDPVHASSAFATRRSERKKGVPWTEEEHRLFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDVCPDSTSMPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEYEPMETTSEENIEEANETTMGSNGFTPMTQGFFPPYLPASFSIWPSIGAPFEEVNRGETSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETRVLDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLNSGKNNAIQAV* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3548 353 ProSiteProfiles SANT domain profile. 111 159 IPR017884 -
Mtr2g3548 353 PANTHER TRANSCRIPTION FACTOR KUA1 1 347 - -
Mtr2g3548 353 SUPERFAMILY Homeodomain-like 105 160 IPR009057 -
Mtr2g3548 353 MobiDBLite consensus disorder prediction 57 72 - -
Mtr2g3548 353 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 106 158 IPR006447 GO:0003677
Mtr2g3548 353 SMART sant 107 157 IPR001005 -
Mtr2g3548 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 159 IPR017930 -
Mtr2g3548 353 Gene3D - 109 160 - -
Mtr2g3548 353 CDD SANT 110 155 IPR001005 -
Mtr2g3548 353 PANTHER OS01G0187900 PROTEIN 1 347 - -
Mtr2g3548 353 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Mtr2g3548 353 MobiDBLite consensus disorder prediction 57 92 - -
Mtr2g3548 353 MobiDBLite consensus disorder prediction 330 353 - -
Mtr2g3548 353 Pfam Myb-like DNA-binding domain 110 155 IPR001005 -
Mtr2g3548 353 MobiDBLite consensus disorder prediction 187 217 - -
Mtr2g3548 353 MobiDBLite consensus disorder prediction 165 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3548 Mtr-Chr2 49534740 49538511 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr2g3548 Myb_DNA-binding 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3548 - - gmx:778036 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3548 2 49534740 49538511 Mtr2g3548 2 49534740 49538511 ECH