Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3541 ATGAATGAGATGTCAAGGAATGAAAGAGAATCTTCTGAGGAAAGAAAGCTTGAACTAAGGCTTGGTCCACCTGGTGTTGAAGACTGGTTTCACACCCACAACAAACAAAGAATCTCATTTGGTAACTACTTTTCTTCTTCAAACAATGGTTTTCAACATGTGAGAGGTAACAAAGAATCTTCATCATCACAAACCTGTTGTCCTAAGAGAGTAGAGTTACAGAATGGTGATAATAACAAAGTAACAGCTGTTTCCAACACCTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTGGGTTGGCCACCAATTCGTTCATTCAGGAAGAATCTTGCAACTAGCAGCAGTTCTAAGCCATCACCACCAGAATCTCAGACTCAACAGGACATGCACAACAATGTTTCTGCTGGTAAAAAACCTATTGACAACAACTATGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGTGTTCCAATTGGTAGAAAAGTTGATCTCAATGCTTATCATAGCTATGATAATCTTTCTTCAGCTGTGGATGACCTCTTTAGAGGACTCCTTAAAGCTCAACGAGATTCCTCTGCTTGTGGTGGTAATAACAAGAAAGAAGAGGAAGAGAAAGTGATTACTGGATTATTGGATGGAAGTGGAGAGTATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTACAGAGCTTTCTGCTTTTACACTTGGTACTAGGCAAGACAAGATATCTACTTAA 810 0.3988 MNEMSRNERESSEERKLELRLGPPGVEDWFHTHNKQRISFGNYFSSSNNGFQHVRGNKESSSSQTCCPKRVELQNGDNNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSSSKPSPPESQTQQDMHNNVSAGKKPIDNNYGKGLFVKINMDGVPIGRKVDLNAYHSYDNLSSAVDDLFRGLLKAQRDSSACGGNNKKEEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTRQDKIST* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3541 269 SUPERFAMILY CAD & PB1 domains 138 249 - -
Mtr2g3541 269 Gene3D - 142 263 - -
Mtr2g3541 269 MobiDBLite consensus disorder prediction 77 139 - -
Mtr2g3541 269 MobiDBLite consensus disorder prediction 1 26 - -
Mtr2g3541 269 MobiDBLite consensus disorder prediction 77 93 - -
Mtr2g3541 269 Pfam AUX/IAA family 17 257 IPR033389 -
Mtr2g3541 269 ProSiteProfiles PB1 domain profile. 147 252 IPR000270 GO:0005515
Mtr2g3541 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 265 IPR003311 GO:0005634|GO:0006355
Mtr2g3541 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 265 - -
Mtr2g3541 269 MobiDBLite consensus disorder prediction 1 22 - -
Mtr2g3541 269 MobiDBLite consensus disorder prediction 107 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3541 Mtr-Chr2 49451937 49456031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3541 151 261 B3 DNA Binding Superfamily AT4G23980 34.234 4.46e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr2g3541 AUX_IAA 1.3e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3541 K14484 - gmx:100804593 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0392 8 4465663 4469578 Mtr2g3541 2 49451937 49456031 ECH
Mtr2g3541 2 49451937 49456031 Mtr2g3541 2 49451937 49456031 ECH
Mtr2g3541 2 49451937 49456031 Mtr8g0392 8 4465663 4469578 PCT