Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3540 ATGGGAAAAGCTAGTAGATGGTTGAAGGGTTTGTTTGGAATGAAAAAAGAGAAGGAATATAGTAACAAATCAGGACCATTGGTTCTTGACAAGAAGGAGAAGAAAAGATCAGGGAAGAATGATAATCACATTGACCATCAGACTAGTGCTCCAGCTTTTGATGATGCTTGGTACAAATCCTATGTTGCTGAAAAACAGAAACAGAATGAGCATAACAAAAATGCAATTTTTGTGAGGTCATTAAGCCATGGCAGTGGCAGAAAGTCATTGTTATTTGGAAGCAAAGAGATGTTGGCTGCTGTGAAGATTCAAACTTTTTTCAGAGGCTATTTGGCGCGAAAGGCTCGTAGAGCACTAAAAGGATTGGTTAGGATCCAAGCTCTTGTTAGAGGGTTCCTAGTTAGAAAAAGAGTTGCAGCAACACTTCATAGTATGCAAGCTCTAATGAGAGCTCAAGCTGTTGTCCAGTCAAGACGAGCCCGTAATTCCATCGACAAGGAGAACATGTGTCAGCCAGAAATCCGTGGACGAAAACATGTGCAAATGTTCGATGAAACTAGAAATCGACAACACAATAAATGGCTTCCCAATTCCTCAAGTAGATTTGCACAGAACCCGAAAGTTGTTCTGATTGATCCTCACAAGTCTGGTTCGAGATCTGCAATGTCCGAATACGGAGATGATTTGTATGACTCCTATGAAGCAACATCTCTTCCTTGTCAAATTCCGCGTCGAATCTCAGTTCATGATTGCCAATATTCTCAAGATTTTGATTGGTGCAACAATAATGTTAACGATGAACGCAGACTCTACACAGCTCATAGCACTCCTCGATTAGTGAATTCTTCGCAAGCTAATCCTCTGGCGAAGAGTGTTTCAGAAGATACCAGCTTGTTCATGCCTTACTCAAATTTTCCTAACTACATGGCTAATACTCATTCATCTAAGGGAAGAGTGGTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGACCTCAAGAAAAGGGCTCCTCTTGATGAAATAATGGCCACAAGAAATAGCATAAGTTGTGTTAGAATGCATTGGTAA 1068 0.4082 MGKASRWLKGLFGMKKEKEYSNKSGPLVLDKKEKKRSGKNDNHIDHQTSAPAFDDAWYKSYVAEKQKQNEHNKNAIFVRSLSHGSGRKSLLFGSKEMLAAVKIQTFFRGYLARKARRALKGLVRIQALVRGFLVRKRVAATLHSMQALMRAQAVVQSRRARNSIDKENMCQPEIRGRKHVQMFDETRNRQHNKWLPNSSSRFAQNPKVVLIDPHKSGSRSAMSEYGDDLYDSYEATSLPCQIPRRISVHDCQYSQDFDWCNNNVNDERRLYTAHSTPRLVNSSQANPLAKSVSEDTSLFMPYSNFPNYMANTHSSKGRVVRSHSAPKQRPDLKKRAPLDEIMATRNSISCVRMHW* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3540 355 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Mtr2g3540 355 Gene3D - 56 121 - -
Mtr2g3540 355 PANTHER IQ-DOMAIN 5-RELATED 1 345 - -
Mtr2g3540 355 MobiDBLite consensus disorder prediction 23 43 - -
Mtr2g3540 355 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Mtr2g3540 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 139 IPR027417 -
Mtr2g3540 355 MobiDBLite consensus disorder prediction 23 48 - -
Mtr2g3540 355 Pfam Protein of unknown function (DUF4005) 287 349 IPR025064 -
Mtr2g3540 355 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 345 - -
Mtr2g3540 355 SMART iq_5 117 139 IPR000048 GO:0005515
Mtr2g3540 355 SMART iq_5 95 116 IPR000048 GO:0005515
Mtr2g3540 355 Pfam IQ calmodulin-binding motif 123 137 IPR000048 GO:0005515
Mtr2g3540 355 Pfam IQ calmodulin-binding motif 99 114 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3540 Mtr-Chr2 49429090 49431119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3540 1 353 IQD Protein Family AT3G16490 39.394 2.16e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3540 - - gmx:100797686 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3540 2 49429090 49431119 Mtr2g3540 2 49429090 49431119 ECH
Mtr2g3540 2 49429090 49431119 Mtr8g0395 8 4504145 4507602 PCT