Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3538 ATGACTTGTTTTGGGAACAGTTCCTCACTGAATGACTTGTTTTGCAACACTTGTTATACTACTGGATTTATAGCCATGTATGCAACTCTTGTCAGCCGAGATGTGGATTGCTGTTTGATTCCAGAGTCACCATTTTACCTTGAAGGACCAGGTCAGGAGCTAATTCCTTCTAATGACACATCTATTAAGAATAAGCCAGATGCTTCATCGAACGACTTGTTTCAAGATGTTGATCTGTGGTTATCTCAGAAAAGTAAGCAAATGCCAACAACCAGAGACAAGAGACAGCCTTTGAGTCAAATGGATGCTGCACAGCCATCCTCATCCACCGCCACTGAAAATGAAGGAGGTCCGGCGCCGTTTGTTCAGAAGACGTATGACATGGTGGATGATTCCGCGACGGATGATATCGTCTCATGGAGCTCTACCAACAACAGCTTTGTGGTTTGGAACCCTCCGGAGTTCGCTTACGTTCTTCTTCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCATCAGCTCGATACCTATGGATTTCGAAAAATTGATTCAGAGCGTTGCGAGTTTGCTAATGAAGAATTTATAAAAGATCAAAAACATCTTCTGAAGAATATAGACTGTAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTGCTGTTGATCCAGAAAGGGCAGCTTTAGAGGAAGAAATAGAGAAGCTTTCCCAAGAGAAAAATTCGCTCGAGTCCAGGTTATTAAACGCCACGGTTGATGTTGAATCAACAAAGTTTCAGCTGGATGTTTTAGAGCAGCTACTGGATAGCATGGAGAAGAGGCAGACAAGTTTGTCAAACTTCTTTGAGAAGGCTCTTCAGAATCCTAATTTACTTGATCATGTTAGGCGCAATATCGAATCCATGGATGTGGTGGCATATAATAGCTTGATTGCCAATCAAAGCAATTTCATTCTGGAATTTGAAAATGTTTTCCATCAAGAATTTTCGAATAAACTTAGACTGGAATTGTCACCATCTGTCTCAGATATGAACTTTGTATCTGGTAGCACACATGTTTCAAATGAAGATGAGGAAAGCCTGCAGAAACATTTGTCTGAAGGAGAACTGACAGAAATGCAGACAAGAACTGAAAGACCAGGCTGTTCAGAAAATGAAGAGGCAATCTTACCATCAAGCAAATCCAAATAA 1197 0.411 MTCFGNSSSLNDLFCNTCYTTGFIAMYATLVSRDVDCCLIPESPFYLEGPGQELIPSNDTSIKNKPDASSNDLFQDVDLWLSQKSKQMPTTRDKRQPLSQMDAAQPSSSTATENEGGPAPFVQKTYDMVDDSATDDIVSWSSTNNSFVVWNPPEFAYVLLPTYFKHNNFSSFIHQLDTYGFRKIDSERCEFANEEFIKDQKHLLKNIDCRKPIHSHSHPPGSAVDPERAALEEEIEKLSQEKNSLESRLLNATVDVESTKFQLDVLEQLLDSMEKRQTSLSNFFEKALQNPNLLDHVRRNIESMDVVAYNSLIANQSNFILEFENVFHQEFSNKLRLELSPSVSDMNFVSGSTHVSNEDEESLQKHLSEGELTEMQTRTERPGCSENEEAILPSSKSK* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3538 398 Pfam HSF-type DNA-binding 121 208 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g3538 398 SUPERFAMILY "Winged helix" DNA-binding domain 117 207 IPR036390 -
Mtr2g3538 398 MobiDBLite consensus disorder prediction 351 398 - -
Mtr2g3538 398 SMART hsfneu3 117 210 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g3538 398 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 113 381 - -
Mtr2g3538 398 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 113 381 IPR027725 -
Mtr2g3538 398 SUPERFAMILY Phosphofructokinase 21 55 IPR035966 GO:0003872|GO:0006096
Mtr2g3538 398 Coils Coil 228 276 - -
Mtr2g3538 398 PRINTS Heat shock factor (HSF) domain signature 121 144 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g3538 398 PRINTS Heat shock factor (HSF) domain signature 159 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g3538 398 PRINTS Heat shock factor (HSF) domain signature 172 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g3538 398 Gene3D - 114 211 IPR036388 -
Mtr2g3538 398 MobiDBLite consensus disorder prediction 85 116 - -
Mtr2g3538 398 MobiDBLite consensus disorder prediction 358 385 - -
Mtr2g3538 398 MobiDBLite consensus disorder prediction 85 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3538 Mtr-Chr2 49393144 49398051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3538 121 391 HSF AT4G13980 51.557 1.52e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr2g3538 HSF_DNA-bind 9.5e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3538 K09419 - gmx:100786408 364.77