Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3525 ATGGATTGTCTTAGTTGGGATGATGATTCACAATTTGTTGCCAACATACCAATCTTGTGGAACACTCAACCACAAGACTTTGCAAGAGACTATTCAATGTGCAACCCAAGTTCAAGTGTTTTTAACAATCAGATGCAAGAAATGCAGAAGGTTGAATCAGGAGCTGGAAATAGTTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCAGTCAATATCCATCCACCTAACAATTATGTGCCACTGCCTGATTTCAACATGGCCCACCAACCAATCAGCAAGAGTACTACTACATGCTCACTTGAATCATCTCTTGATTGTTTGCTTTCAGCTACTACTAACAGTAACACTGACACTAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTTATGGAACTTTAGTGCAGTTTCCTCTGCTGAATCTGAGAGTACTAATGCTAGAAACAAAGACATGCAGTATGGATTCAAGGAACTAGATCAGGAAACAGTATCTCCAGCTTCCTCAGATCAAGGTAAAATCATTGATAATTCCAAGGTTCATTCCACAAAAAGGACTAATATTGATCAATATGATCCTTGCTTCAGCATTACTGCTCAGAATTCTTCTTCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCCTTTGAAGAGCCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCGGTGACGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAAGGATCCACAAACTGTGGCGGCTAGGCAAAGAAGGGAAAGAATAAGTGAAAGGATTAGAGTCTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGAGCACAAGTCAAAGAACTGGAGAATATAGGAAACAAGATTGATACAGTGAATAATTGTCCTCCTACAAACATAGCCTTCTCCTTCAACCCATCAATTTCCATGCAAAACCCTAATGTCAACATCCAATATTCCCATGATTGA 1179 0.3851 MDCLSWDDDSQFVANIPILWNTQPQDFARDYSMCNPSSSVFNNQMQEMQKVESGAGNSWEETLIFQSYPSLSVNIHPPNNYVPLPDFNMAHQPISKSTTTCSLESSLDCLLSATTNSNTDTNSVQDDGISMIFSDCKNRNLWNFSAVSSAESESTNARNKDMQYGFKELDQETVSPASSDQGKIIDNSKVHSTKRTNIDQYDPCFSITAQNSSSSTEFGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSFEEPDPEAIAQMKEMIYRAAAFRPVTNLGLEVMEKPKRKNVKISKDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQVKELENIGNKIDTVNNCPPTNIAFSFNPSISMQNPNVNIQYSHD* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3525 392 Coils Coil 335 355 - -
Mtr2g3525 392 Gene3D - 296 363 IPR036638 GO:0046983
Mtr2g3525 392 Pfam Helix-loop-helix DNA-binding domain 306 345 IPR011598 GO:0046983
Mtr2g3525 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Mtr2g3525 392 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 382 IPR045843 GO:0003700|GO:0006355
Mtr2g3525 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 300 355 IPR036638 GO:0046983
Mtr2g3525 392 PANTHER TRANSCRIPTION FACTOR BHLH87 1 382 - -
Mtr2g3525 392 SMART finulus 302 351 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3525 Mtr-Chr2 49301697 49304314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3525 105 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 56.098 1.12e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3525 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3525 - - gmx:100793830 412.92