Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3490 ATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCAGGAAACAGAACTCATGAAGTTGATGCCAAATTCTCTCAGCAATACTTTGCTTCATCACAAACTCAAACTCATGATGAAACTCCAGCTAAGAAAAGAAGAAACCTTCCTGGCAATCCAGACCCACAAGCTGAAGTTATAGCCTTATCGCCAAAAACACTGATGGCAACAAATAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAGAATCTTCAACTTCATAAAAGAGGACACAATTTGCCATGGAAGTTGAAGCAAAGAACAAGCAATGAGATAAGGAAGAAAGTTTATGTGTGTCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCCTTGGGGGACCTAACTGGTATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCAGTTCAATCAGACTGGAAAGCTCACTCCAAAACCTGTGGCACAAGAGAATACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCTGAGGAGAGTTCAAGAACCGTAATTCCTCAACCTACACAGCCAAATTCTCATCACAACATGAACAATCTCCAAACTCAAGATATCCAAGGCTTCACATTGAAGAAAGAGCATCAAAGTTTCAACATGTTAAGGCCAGAACAAGAAGTACAAATACCCTCTTGGCTTTGTCAATCATCCATTGATCTCTCTTCAAACTATTCAAGTTTGGATCAAGATCTACACCTTTATGAAAACCCTAACCCTAGAAATGGTCCTACTTCTACACTTCCATCCTACCAACCATCATCTGCAGCTTCACCTCACATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTGCAACCAGCTCATGCTCATCACAGTCCATGATGAGTGGGACCCACCAACAGGGTCACGTGTCTATTGTTGACTCTGCCACCAACAACATGATAAACTCAAATGGTAATTTTAGTTTGAATTTGTCCTCATGTGAAGACCAAATGATAAACAACTCTTTCTCTTCTTCTGGATTTCATGGAACTTCTTTTGAGGATACTTTTGCTGGAAATATTCTTCATTCAAATCAAGATCATAATATCAATCATGATGGTGATAATGATATTCCAAAAACAACCACCAATGATGACGATGTTGCCGCTGGAGGAAACAATGCATTTACAAGAGATTTCTTAGGTCTTAAACCACTCTCTGATAGTGATATCCTCACCATTGCTGGTATGGGAAGTTGCATGAACCCTTCCAACTCCAATCATCAAGAAAACCATTCCCAAAAACCATGGGAAGGTAATTAG 1407 0.4058 MSNLTSASGEASANSSGNRTHEVDAKFSQQYFASSQTQTHDETPAKKRRNLPGNPDPQAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTSNEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRTVIPQPTQPNSHHNMNNLQTQDIQGFTLKKEHQSFNMLRPEQEVQIPSWLCQSSIDLSSNYSSLDQDLHLYENPNPRNGPTSTLPSYQPSSAASPHMSATALLQKAAQMGATSSCSSQSMMSGTHQQGHVSIVDSATNNMINSNGNFSLNLSSCEDQMINNSFSSSGFHGTSFEDTFAGNILHSNQDHNINHDGDNDIPKTTTNDDDVAAGGNNAFTRDFLGLKPLSDSDILTIAGMGSCMNPSNSNHQENHSQKPWEGN* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3490 468 MobiDBLite consensus disorder prediction 1 40 - -
Mtr2g3490 468 Gene3D Classic Zinc Finger 129 208 - -
Mtr2g3490 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Mtr2g3490 468 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Mtr2g3490 468 Gene3D Classic Zinc Finger 54 121 - -
Mtr2g3490 468 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 446 - -
Mtr2g3490 468 MobiDBLite consensus disorder prediction 1 58 - -
Mtr2g3490 468 SMART c2h2final6 75 97 IPR013087 -
Mtr2g3490 468 SMART c2h2final6 151 171 IPR013087 -
Mtr2g3490 468 SMART c2h2final6 116 146 IPR013087 -
Mtr2g3490 468 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Mtr2g3490 468 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Mtr2g3490 468 MobiDBLite consensus disorder prediction 276 304 - -
Mtr2g3490 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3490 Mtr-Chr2 49012181 49015178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3490 1 452 IDZ Gene Family AT1G55110 49.893 1.65e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g3490 zf-C2H2_jaz 4.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3490 K25870 - lja:Lj3g3v0323160.3 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3490 2 49012181 49015178 Mtr8g0495 8 5747879 5750937 PCT