Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3479 ATGGGGCATCACTCTTGCTGCAATAAACAGAAGGTGAAAAGAGGACTATGGTCACCAGAAGAAGATGAAAAACTCATCAACTACATCACTAATTATGGACATGGTTGTTGGAGTTCTGTCCCTAAACTTGCAGGACTGCAGAGATGTGGAAAAAGTTGCAGGTTGAGATGGATAAATTATTTAAGACCTGATTTGAAACGTGGAAGTTTTTCTCCACAAGAAGCTGCTCTTATTATTGAACTTCATACCATTCTAGGAAACAGGTGGGCTCAGATAGCAAAGCATTTACCAGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAACTACTTTCACATGATTTTGTTCCCACTTCTTTAGCCACATTTTCTGATATTCACTGTCCTAGAAATGGTTCTGTTGAAAGTTTCTTCCCTTTATTTAATGACAATCCTATCCTTAACTCCAATCATCAATATCACTTTGACAACCACCTTTACCTTCCCATCAATATCCCAACTCCAATCCTACAAGGTATTGATCATCAAAATGATATCAAAAATATTGATATCAACAGTTATAATCCCAATTTCCTACATGTTCAGAATAATCCAATATTGCCTGAAACACTACCATCATCAAATATTCCATCTTCATATGAATTAGATACATGGTCATTAATTCATCATCTCAATCCAAATATTCAAGAAAATCATCAAATCACCACCAAAAGTGATGCTGCCACCCAAAACTATAATATTGTTGATCAGAATTTTATCAATATTCCAAATACAAATACATATACATGGCAGCAGCAGCAGCAGCACTATGACAGTAATAGTCATTTAGTGAATCAACTTGAACCTATTGTGCAAAAAGTTTTTGACAGTGAAACCATTAAGGATAATTATGTTTGTAGCATCCCATTTTCTTCTTCTGCTTCTTCACAAGAACATGATCATCATCATCATGAAGTTGTAAACCAAATTGCTGATCAGTGTTATAATACAGATCATTATCAGGGTGCTATAATTTGTCCAAAACAAGATCATCATCAAACTATGGCTGCACCAAATAATGATCATCAAGTGGAGTATAACATTGAAGCTCTCATCATGTCATCATTGCCATCTTCAACAAAAACATCTTCTTCATCACCACTGTCATTCTATCAACCAGTCACTCTCACAAAACCTATCCTTCCTTAA 1206 0.3516 MGHHSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDFVPTSLATFSDIHCPRNGSVESFFPLFNDNPILNSNHQYHFDNHLYLPINIPTPILQGIDHQNDIKNIDINSYNPNFLHVQNNPILPETLPSSNIPSSYELDTWSLIHHLNPNIQENHQITTKSDAATQNYNIVDQNFINIPNTNTYTWQQQQQHYDSNSHLVNQLEPIVQKVFDSETIKDNYVCSIPFSSSASSQEHDHHHHEVVNQIADQCYNTDHYQGAIICPKQDHHQTMAAPNNDHQVEYNIEALIMSSLPSSTKTSSSSPLSFYQPVTLTKPILP* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3479 401 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr2g3479 401 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr2g3479 401 PANTHER MYB DOMAIN PROTEIN 55 1 364 - -
Mtr2g3479 401 CDD SANT 17 61 IPR001005 -
Mtr2g3479 401 Gene3D - 11 67 - -
Mtr2g3479 401 Gene3D - 69 116 - -
Mtr2g3479 401 SMART sant 13 63 IPR001005 -
Mtr2g3479 401 SMART sant 66 114 IPR001005 -
Mtr2g3479 401 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Mtr2g3479 401 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr2g3479 401 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr2g3479 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr2g3479 401 CDD SANT 69 109 IPR001005 -
Mtr2g3479 401 PANTHER TRANSCRIPTION FACTOR MYB26 1 364 - -
Mtr2g3479 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3479 Mtr-Chr2 48903005 48904825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3479 1 196 MYB Transcription Factor Family AT3G13890 65.700 1.95e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr2g3479 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3479 K09422 - gmx:102662609 427.943