Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3471 ATGGGAAATCAGAAGCAGAAGTGGACAGCTGAAGAAGAAGAAGCCTTGCATCAAGGTGTTCAGAAATATGGTGCTGGAAAATGGAAGCACATTCTCAAAGACCCTCAATTCAGTCAAAAACTCGCTAGCCGCTCCAATATCGATCTAAAGGATAAATGGCGGAATTTGAATGTTTTTCCTGGTCAAAACCCTAAAACTCCTAAGGGTAAACCATCTGGGTCCTCTCCTGCTCCAAGCAATGCTACTCCTTCTCCGTCTCCTGCTCCTGGTACTCCTGCTGCTTCTGCTGGTACTCCTGCTGCTGCTGCTGCTGCTGCTGCTCCGGTCAATGTTGCTGCTACACCTCAAGCTCAGACTACGATTCGGACTCCTACTAGTCAGCCTTCTCAGAATGATGACAATGCTGCCAAGATTTATCCTCAGTACAATTCATTGATTTTTGAAGCTCTATCAACAATCAAGGATCCCAATGGTTCTGACTTAAATGCTATTATTAGCTTCATTGAGCAAAAGCACAGCTTGCCTCAAAGTCAAAATTTCAGAAGGACACTAGGTGCAAAGTTAAGAAGGCTTGTCGGTCAAGGGAAACTTGAAAAGGTACAAAATGGTTACAAGATAAAGGACACCTCAGTGGGGGTGAAGTCAGCTGATGACTCAAAACCACCTGCACCAATAGAAATGGATCTGCCAGGGTCATCAAATAATTTTGCATATGATGATGCCATAAAGGAAGCTTCCGAAACTCTAGCCTGCAGACTTGCTGACGCGGAGAATAAGTCATTTTTGGCTACTGCAGCAGTCAGGGAGACAGAAAGATATTCAAAGTTTGGGGAGGAAAATGATGCAATGTTAAAGATTGCAGAAGAGATTTACGCAAAATGTATGCTCGGTGAAACTGTTCGCTTCACTTAA 912 0.4386 MGNQKQKWTAEEEEALHQGVQKYGAGKWKHILKDPQFSQKLASRSNIDLKDKWRNLNVFPGQNPKTPKGKPSGSSPAPSNATPSPSPAPGTPAASAGTPAAAAAAAAPVNVAATPQAQTTIRTPTSQPSQNDDNAAKIYPQYNSLIFEALSTIKDPNGSDLNAIISFIEQKHSLPQSQNFRRTLGAKLRRLVGQGKLEKVQNGYKIKDTSVGVKSADDSKPPAPIEMDLPGSSNNFAYDDAIKEASETLACRLADAENKSFLATAAVRETERYSKFGEENDAMLKIAEEIYAKCMLGETVRFT* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3471 303 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mtr2g3471 303 MobiDBLite consensus disorder prediction 115 135 - -
Mtr2g3471 303 SMART sant 4 59 IPR001005 -
Mtr2g3471 303 MobiDBLite consensus disorder prediction 59 77 - -
Mtr2g3471 303 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 301 - -
Mtr2g3471 303 Pfam linker histone H1 and H5 family 140 203 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr2g3471 303 Gene3D - 2 58 - -
Mtr2g3471 303 Gene3D - 135 223 IPR036388 -
Mtr2g3471 303 MobiDBLite consensus disorder prediction 46 101 - -
Mtr2g3471 303 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Mtr2g3471 303 CDD SANT_TRF 6 57 - -
Mtr2g3471 303 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 138 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr2g3471 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Mtr2g3471 303 SMART h15plus2 136 203 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr2g3471 303 PANTHER SINGLE MYB HISTONE 4 1 301 IPR044597 GO:0003691
Mtr2g3471 303 MobiDBLite consensus disorder prediction 78 92 - -
Mtr2g3471 303 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mtr2g3471 303 SUPERFAMILY "Winged helix" DNA-binding domain 139 208 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3471 Mtr-Chr2 48823867 48829007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3471 1 300 Single Myb Histone (SMH) Gene Family AT1G72740 43.137 6.66e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr2g3471 Linker_histone 4.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3471 K09422 - gmx:780537 244.588