Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3462 ATGAAGTGCTTATGCGAGAAAGACTCTGCTCATTCAACACCCCACCATATTTTTGGATGTCCATCATGGGGAACATCTTCTGAATCTCAAGTCCAACAAACATCCATGTCCAAAGGTTTGAGCTTCAAAGTGGAAGCTCTGCCACAAGAATGCCACAACAGTAAAGCATTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGACTGGTTCATCACAATCAGGTCAAATTCCTTTCCAGCATTGTTCTTCTACTGGTTCAACATTTAAGAGAACTGAGGAGAACAATATGGGATGTCTCATCGGATCATCATCTATTGGGAGTCCAAATCTCACCGTCCATCCTCCACTAATGGATCACAGCCAATCACTTGCGCATGTTGCACTCCACTATGCTGATCCAGGCTACAATGGCCTACTTTCTGCTTCATATGGCCAACAATACAAGTTACAGGCTTATAGCATCATGTCATCAAATTCTGACCAGCTTCTTCAGGGCCAGCTAATGGAAACTGCTTCTGTTCGAATTCCCTTGCCATCTGATATGGCGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTATGAGGCGAAGACAGTGTCGGGCAAAACTTGAAGCACATAACAAACTCATAAAGGATCGTAAACCATATCTTCACGAGTCCCGACATGTACATGCATTAAAGAGAGCTAGAGGAGCCGGTGGCCGTTTTCTCAATGCTAAAAAGCTCCAAGAATCAAAGCTTGATTCGCCAAACCATGGCCAAAATGTTTCCACCGGCTATACTTGTTTGAATTTGAATGGAAATATGTCGGAACCTAAAATGCATGATCAGGTTGAAAACTACAGAGACGATGCTTCTGATGTCGCATATGGATCTAATAGGAATGAAATGTTTCAGCAGCAACAGGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGGAACATGCAGGATTATACATCTGACAAGAATGTTGGTGCGAATCAACGCCGACTATCCGTCCGCATGTGA 1044 0.4282 MKCLCEKDSAHSTPHHIFGCPSWGTSSESQVQQTSMSKGLSFKVEALPQECHNSKALSFQFQEQDSSSTQSTGSSQSGQIPFQHCSSTGSTFKRTEENNMGCLIGSSSIGSPNLTVHPPLMDHSQSLAHVALHYADPGYNGLLSASYGQQYKLQAYSIMSSNSDQLLQGQLMETASVRIPLPSDMAEEPIYVNSKQYHAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKLDSPNHGQNVSTGYTCLNLNGNMSEPKMHDQVENYRDDASDVAYGSNRNEMFQQQQELEFRLCSYPSSQTGRNMQDYTSDKNVGANQRRLSVRM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3462 347 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 188 243 IPR001289 GO:0003700|GO:0006355
Mtr2g3462 347 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 17 312 - -
Mtr2g3462 347 SMART cbf3 185 246 IPR001289 GO:0003700|GO:0006355
Mtr2g3462 347 MobiDBLite consensus disorder prediction 323 339 - -
Mtr2g3462 347 ProSitePatterns NF-YA/HAP2 subunit signature. 191 211 IPR018362 GO:0003677|GO:0016602
Mtr2g3462 347 MobiDBLite consensus disorder prediction 62 89 - -
Mtr2g3462 347 Gene3D - 186 247 - -
Mtr2g3462 347 PRINTS CCAAT-binding transcription factor subunit B signature 189 211 IPR001289 GO:0003700|GO:0006355
Mtr2g3462 347 PRINTS CCAAT-binding transcription factor subunit B signature 220 243 IPR001289 GO:0003700|GO:0006355
Mtr2g3462 347 ProSiteProfiles NF-YA/HAP2 family profile. 186 246 IPR001289 GO:0003700|GO:0006355
Mtr2g3462 347 MobiDBLite consensus disorder prediction 323 347 - -
Mtr2g3462 347 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 312 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3462 Mtr-Chr2 48768156 48772492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3462 10 347 CCAAT-HAP2 Transcription Factor Family AT1G17590 38.056 5.36e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mtr2g3462 CBFB_NFYA 6.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3462 K08064 - gmx:100500765 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3462 2 48768156 48772492 Mtr2g3462 2 48768156 48772492 ECH
Mtr2g3462 2 48768156 48772492 Mtr8g0572 8 6843712 6847520 PCT