Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3453 ATGGAATACCCTTATTATTCTAAGGGAGGAGGAATTGGGTATTGGCAGTCTCCTGGAACTCAGTTCGAAGGGCCAACATCATTAGATGGTGGAATCAACAATTTGGTGTCAGAAGATATGCCTAACAGCTTCTCCGAGCTCATGAACTTTGATACTTATGCTGGTTTGTGTTCTGGCCCATCCACGACCGATCAGATTATGACTAATGAGCTTCCATCTCTTGCCTCAGCATTGTATCAATTGCCTGATGGATTCAATCCAGTCGAACCGAACAGTGGACAATTCTATGGTGGAAATTACAATAATTTCGAAAGCTCCCCTATTTTTGGGGAGAAAATTGTGTGTCAGCAAATGGATACCCTACTTGGTTTCTTAGACAATAGCAATGATGCAAATAACTCAAGTTCTAGGCAAAAATTTGACGACCCTTCGCAACATGTCAACGCCTTTGATATGGGCAATTACGTTATTGCCAGGCCACAAGCTTTAATCTCCAGGCCACCTGCTTTGTCACTTGATGAGAGAATGCTGAAAGCCTTGTCCTTCTTTAAAGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGCATGATGGTCAAGTACTCTTAAGCACCAGCGAGCAACCTTATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTTTCAAGGACATTTAGATTTTCTACAGAAGGGAAACCAGGTTGTATACCGGGTCTTCCTGGCCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAATCCAAAGGAGTACTTGAGGGCTGAGCATGCAAGAAATCACGAGGTTCGTGGATCGATTGCTTTTCCCATATTTGATCTGCACTCTGGACTGCCATGTTCTGCTGTCTTGGAACTTGTCACTACAAAGGAAAAGCTTGATTTTGACAGAGAGTTGGAAATAATTTGTCGGTCACTTCAGCTTGTAAATTTAAGGACTACTGCGTCTTCTCGGCTGCTTCCTGAGTGTCTTTCGACCAATAAAAGAGCTGCTTTAACAGAGATAGTAGATGTGTTACGATCTGTGTGTTATGCACATAGATTGCCATTGGCACTAACATGGATTCCCTGTTTTTATACTGACGGCACAAGAGACGAAACTACTAGAATACAAATTAAAGAGGGTAATTCAAGTTCTAGAGAAAAAAACATACTGTGTATTGAAGAATCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTGCATGCATGCATTGAACATCCTCTTGAGGAAGGGAATGGTGTAGCTGGGAAAGCACTTCAATCAAACCATCCTTTCTTCTATTCTGACGTGAAAACATATGATATTAGCGAGTATCCGCTTGTTCATCATGCACGCAAGTTCAATTTGGGTGCTGCAGTTGCAATCAGGCTAAGGAGTATTTATACCAATAATGATGATTACATATTGGAATTCTTTCTTCCTATCAATATGAAAGGGAGTTCAGAACAGCAACTCTTATTAGACAACCTCTCAGGTACCATGCAGAAAATTTGTAAGAGTTTGAGGACAGTTTCAGGCGCTGAAATATCAGGAATGGAAAGCTCAGTGGTGGGGTTTGGAAAGAAAAATGTCCCAAGTTTCCCCTCCACATCTACGAGGAACTCTCAGGTATCATTAATAAATGAAAAGGATGGTTCTGTTCAGAAGCTATCATTGGATACTTCTAACCTGAGAAACAATGGAAACAAGCCTTCTTGTAATCAGGAAAATAATGGATCGAGAAGGCGAGTTGAGAAAAAAAGAAACACATCAGAGAAGAATGTTAGCTTGAGTGTTCTTCAGCAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTGGACTCTGTTCAGGGAGTTGAAGGCGGGTTGAAGTTTGATCCTTCCTCGGGAGCATTTGTGGCAGGAGGGACAACCACAGAAGAAATCAATGAAAATAAAAGTCTCCTTTTCCCTGAGAGAAGTACTACACAAGACTCTGAGCCTATGTCACAAAATGCTGTATCGGTTCCTAGTGAAGATGAGAATTTGGAAAATAAGTGGGAGGGAAAATTGAAGGAAACCAATACTTGTTCGATCGATTGCAGTGAAGATTCAAAATCATTTGCAATGGATGATTGTCCTGAACAAGCTTATATTGGTTCCGTTCTTGCAAAATGTGATGAATGGGTTCTAAACAATGGCGGTTTGAGAGAAGAAAAACGTAAACATAGTACTATTGGCCAGAGGACAAGTTCCTTTGCTGTTGATGAGATGGACACTGGTGCGGATGGGGATGATGATGATGTTGTTGAACACAACCATCCTACTTCTTCAAGCTTGACAGATTCGTCTAATGGCTCTGGTTCAATGATACATGGCAGTTCATCAGGTTATCAGAACTTTAAGAACCAGAAGCCGTCCAAAGGCAAATCAACCATAGTTGATAGCGGGTCTAAAATCGTTGTGAAAGCTACCTATGGAGAAGACACCATTCGTTTCAAGTTTGATCCATCCACAGGTTATTATAAACTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAGACGGATCATTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCAGATTTGCAAGTGTGTTTGGAAATATTGAATGACATGGGGACACATAATGCCAGGTTTCTTGTTCGCGATATTCCTTGTACTTTTGGCAGCTCTGGCAGTAGCAGTTGCTACTTGGGAGGCAGCTCATAG 2895 0.4124 MEYPYYSKGGGIGYWQSPGTQFEGPTSLDGGINNLVSEDMPNSFSELMNFDTYAGLCSGPSTTDQIMTNELPSLASALYQLPDGFNPVEPNSGQFYGGNYNNFESSPIFGEKIVCQQMDTLLGFLDNSNDANNSSSRQKFDDPSQHVNAFDMGNYVIARPQALISRPPALSLDERMLKALSFFKESAGGGILAQVWVPIKHDGQVLLSTSEQPYLLDQMLAGYREVSRTFRFSTEGKPGCIPGLPGRVFISKVPEWTSNVGYYNPKEYLRAEHARNHEVRGSIAFPIFDLHSGLPCSAVLELVTTKEKLDFDRELEIICRSLQLVNLRTTASSRLLPECLSTNKRAALTEIVDVLRSVCYAHRLPLALTWIPCFYTDGTRDETTRIQIKEGNSSSREKNILCIEESACYITDRVMEGFVHACIEHPLEEGNGVAGKALQSNHPFFYSDVKTYDISEYPLVHHARKFNLGAAVAIRLRSIYTNNDDYILEFFLPINMKGSSEQQLLLDNLSGTMQKICKSLRTVSGAEISGMESSVVGFGKKNVPSFPSTSTRNSQVSLINEKDGSVQKLSLDTSNLRNNGNKPSCNQENNGSRRRVEKKRNTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSSGAFVAGGTTTEEINENKSLLFPERSTTQDSEPMSQNAVSVPSEDENLENKWEGKLKETNTCSIDCSEDSKSFAMDDCPEQAYIGSVLAKCDEWVLNNGGLREEKRKHSTIGQRTSSFAVDEMDTGADGDDDDVVEHNHPTSSSLTDSSNGSGSMIHGSSSGYQNFKNQKPSKGKSTIVDSGSKIVVKATYGEDTIRFKFDPSTGYYKLYEEVAARFKLQDGSFQLKYLDDEEEWVMLVNDSDLQVCLEILNDMGTHNARFLVRDIPCTFGSSGSSSCYLGGSS* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3453 964 Pfam PB1 domain 866 944 IPR000270 GO:0005515
Mtr2g3453 964 MobiDBLite consensus disorder prediction 705 727 - -
Mtr2g3453 964 CDD PB1_NLP 867 945 IPR034891 -
Mtr2g3453 964 MobiDBLite consensus disorder prediction 705 724 - -
Mtr2g3453 964 ProSiteProfiles RWP-RK domain profile. 586 674 IPR003035 -
Mtr2g3453 964 SMART PB1_new 864 946 IPR000270 GO:0005515
Mtr2g3453 964 MobiDBLite consensus disorder prediction 784 857 - -
Mtr2g3453 964 MobiDBLite consensus disorder prediction 819 857 - -
Mtr2g3453 964 SUPERFAMILY CAD & PB1 domains 855 948 - -
Mtr2g3453 964 PANTHER PROTEIN NLP8 6 961 IPR045012 GO:0003700
Mtr2g3453 964 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 961 - -
Mtr2g3453 964 MobiDBLite consensus disorder prediction 571 605 - -
Mtr2g3453 964 Pfam RWP-RK domain 606 654 IPR003035 -
Mtr2g3453 964 ProSiteProfiles PB1 domain profile. 864 946 IPR000270 GO:0005515
Mtr2g3453 964 MobiDBLite consensus disorder prediction 571 590 - -
Mtr2g3453 964 Gene3D - 861 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3453 Mtr-Chr2 48673805 48706254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3453 1 961 NLP Transcription Factor Family AT2G43500 48.476 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr2g3453 PB1 3.1e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3453 - - gmx:100804426 1293.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3453 2 48673805 48706254 Mtr2g3453 2 48673805 48706254 ECH
Mtr2g3453 2 48673805 48706254 Mtr4g2013 4 33670301 33676037 PCT