Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3439 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCAGCAACAATGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATATTGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAACATCAGAGGATTCATCTTCAATCTCTCTCTAACAAGCTCCCTAGATGTGACATATGCCAAGACAAGACAGCTTTCATATTTTGCGTTGAAGATAGGGCACTCTTCTGTGAGGATTGTGACGAGTCGATTCATTTACCTGGAAGCCTTTCTGCAAATCACCAGCGCTTCCTTGCGACCGGTATCCAAGTGGCCATGAAATCTAACTGCGCCAAAGACGACGAAAAAACTCACTTGGAACCACCTAAGAGGAGTACACATCAAGTTTCTCTTGAAACTACTTCTCAGCAAGTGCCTGACTTTACACCCCCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGACTTTAATTCCCATGACAAAAAGGATTCCATGCAGTTTGGAGAGATGGAATGGTTCACAGAGGAGGGTCTTTTTGGTGATGACTTCACTCAAGAAGCCATGGCTGCAGCTGAAGTTCCTCAGCTTCCAGTAACTCATGCAAGCAACAATTATTCATCATACAGAAACTCCAAGTCACATATGTCTAACAAAAAGCCTAGAATTGAACTCATACGTGATTATGATTATGATGATGAAGATGAGTACTTCACCGTGCCTGATCTTGGATGA 732 0.4249 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRIHLQSLSNKLPRCDICQDKTAFIFCVEDRALFCEDCDESIHLPGSLSANHQRFLATGIQVAMKSNCAKDDEKTHLEPPKRSTHQVSLETTSQQVPDFTPPWGVDDLLELADFNSHDKKDSMQFGEMEWFTEEGLFGDDFTQEAMAAAEVPQLPVTHASNNYSSYRNSKSHMSNKKPRIELIRDYDYDDEDEYFTVPDLG* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3439 243 CDD Bbox1_BBX-like 57 98 - -
Mtr2g3439 243 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Mtr2g3439 243 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
Mtr2g3439 243 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mtr2g3439 243 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 243 - -
Mtr2g3439 243 SMART bboxneu5 52 99 IPR000315 GO:0008270
Mtr2g3439 243 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mtr2g3439 243 Gene3D Classic Zinc Finger 1 96 - -
Mtr2g3439 243 CDD Bbox1_BBX-like 5 47 - -
Mtr2g3439 243 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Mtr2g3439 243 MobiDBLite consensus disorder prediction 114 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3439 Mtr-Chr2 48515268 48517523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3439 1 161 Orphan Transcription Factor Family AT1G06040 66.071 1.08e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr2g3439 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3439 - - vun:114183169 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3439 2 48515268 48517523 Mtr2g3439 2 48515268 48517523 ECH
Mtr2g3439 2 48515268 48517523 Mtr4g2001 4 33556561 33559492 PCT