Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3422 ATGGATTCTGATGATATGCATGATGCCAACGATGTTGAATCCCTCGATGACGATTTCTACAGTGGTGAAACCGAAGATGCTCCCATGGATGACTACAGCGACGACTACGATGATGATAATAATAATAATAATAATAATGATGCTGATGATGATTACTTTGATGATGGTGCTGATGATTCTGCTCAGTCTCGGAGTACTGAGATAAATTTTGCCATATTGAAAGAATCAGATATCCGGGATCGGCAGGAAGATGATATCAGTAGTGTCGCAACAGTTCTTTCCATACCACCAGTTGCTGCAAGCATCCTACTTCGTCATTACAATTGGAATGTCAGTAATGTTAATGATGCTTGGTTTGCTGACGAAGACAGAGTCCGAAGAAAAGTTGGCTTGTTGGAGAAGCCAGTTTACGAGAATCCTGATGCCAAAGAGCTTACTTGCGGCATCTGTTTTGAAGCTTATCGTCCTTCTAAGATTCACAATGCTTCTTGCGGCCATCCGTACTGTTTTTCATGCTGGGGAGGATATATTGGCACTTCAATTAACGATGGTCCTGGATGCTTGATGCTGAGATGTCCTGATCCTGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTGCTGAAGATAAACAGAAGTATGACCGTTACCTTATTAGATCTTACATTGAAGACAATAAAAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCAGTTAATTTTGATGCTGGTGGTGAAAATTATGACGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAAGAGGCTCATCGTCCAGTGGATTGTGGCACAGTGTCGAAGTGGATTTTGAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCGAAGCCGTGTCCCAAGTGCAAGAGACCGATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGCGGTTTCTACGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGGGTGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGGTGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACACCAGATGCAAACTGTTCATATGGAGAAGCTTAGTGACACACAATGCCAACCTGAGTCACAACTTAAGTTCATAACCGAGGCTTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTAGCCGAGCATGAGCATGCTAAAAAGCAGTTCTTTGAGTACTTGCAAGGCGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGCGCCGAAAAGGAACTCCAAGTATTCCTCAGTGCTGAAGGCCCGTCTAAAGAATTCAACGATTTTCGCACCAAACTAGCTGGATTGACCAGTGTGACTAAAAACTTCTTCGAGAATTTGGTCAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGTAATGGAGCTGCTACAAGCAAAGCAACGAGTTCAAAAAATGCGGCAGGGAGCAGTAAAGGAAAAAGCGGAAGAGGAAAGGGGACGAAAGCTACCGTGTCCAGCAGATTAACTGATGATAATGAGTGGTCTTGTGAGCAATGTACCTATGCAAATGTTGGATCTGCCACCGCATGCGCGATGTGCAATCAAGAGCGGCAATGA 1794 0.4314 MDSDDMHDANDVESLDDDFYSGETEDAPMDDYSDDYDDDNNNNNNNDADDDYFDDGADDSAQSRSTEINFAILKESDIRDRQEDDISSVATVLSIPPVAASILLRHYNWNVSNVNDAWFADEDRVRRKVGLLEKPVYENPDAKELTCGICFEAYRPSKIHNASCGHPYCFSCWGGYIGTSINDGPGCLMLRCPDPACGAAVDQDMINLLASAEDKQKYDRYLIRSYIEDNKKTKWCPAPGCEHAVNFDAGGENYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHMEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLSAEGPSKEFNDFRTKLAGLTSVTKNFFENLVRALENGLCDVDSNGAATSKATSSKNAAGSSKGKSGRGKGTKATVSSRLTDDNEWSCEQCTYANVGSATACAMCNQERQ* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3422 597 SMART ibrneu5 291 352 IPR002867 -
Mtr2g3422 597 SMART ibrneu5 216 278 IPR002867 -
Mtr2g3422 597 MobiDBLite consensus disorder prediction 535 549 - -
Mtr2g3422 597 MobiDBLite consensus disorder prediction 1 62 - -
Mtr2g3422 597 SUPERFAMILY RING/U-box 217 285 - -
Mtr2g3422 597 Pfam Ariadne domain 365 527 IPR045840 -
Mtr2g3422 597 SMART zf_4 571 595 IPR001876 -
Mtr2g3422 597 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 14 545 - -
Mtr2g3422 597 ProSiteProfiles Zinc finger RING-type profile. 147 191 IPR001841 -
Mtr2g3422 597 Gene3D - 274 529 - -
Mtr2g3422 597 Pfam IBR domain, a half RING-finger domain 295 343 IPR002867 -
Mtr2g3422 597 Pfam IBR domain, a half RING-finger domain 216 278 IPR002867 -
Mtr2g3422 597 MobiDBLite consensus disorder prediction 1 56 - -
Mtr2g3422 597 CDD RING-HC_RBR_TRIAD1_like 147 197 - -
Mtr2g3422 597 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 14 545 IPR031127 GO:0004842|GO:0016567
Mtr2g3422 597 MobiDBLite consensus disorder prediction 535 565 - -
Mtr2g3422 597 ProSiteProfiles Zinc finger RanBP2 type profile. 569 597 IPR001876 -
Mtr2g3422 597 SUPERFAMILY RING/U-box 297 345 - -
Mtr2g3422 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 227 IPR013083 -
Mtr2g3422 597 SUPERFAMILY RING/U-box 142 228 - -
Mtr2g3422 597 Gene3D - 567 597 - -
Mtr2g3422 597 ProSiteProfiles TRIAD supradomain profile. 143 356 IPR044066 -
Mtr2g3422 597 SUPERFAMILY Ran binding protein zinc finger-like 570 596 IPR036443 -
Mtr2g3422 597 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3422 Mtr-Chr2 48295178 48302962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3422 16 596 ARIADNE family AT1G65430 68.034 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3422 K11968 - gmx:100810427 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3422 2 48295178 48302962 Mtr2g3422 2 48295178 48302962 ECH
Mtr2g3422 2 48295178 48302962 Mtr4g1979 4 33348511 33356016 PCT