Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3408 ATGGAGTCAGATCTTCATCAACAACAACAACCACAAGTAAATTCTTCAGGTTTAACACGGTTTAAATCAGCACCAAGTTCATATTTCAACAACATCATTGACAGAGAATTCTACGAGCATGTTTTCAATAAACCATCAAGTCCAGAAACAGAGCGAGTTTTTTCAAGGTTTATTAACAGTTTTGGTTCAGATGATGATTTACTAGCTCAGAAAATCTCAGTAGATTCAACAGTGAAAGAAGAAGAAGAGGTAAATATTAATCAACAGCAACAACAACAAGATCAGGGTTTGGCTTCAATCAACAATGAACATGTGGTTCATCAGCAGAGTAATTATAACAACTCTGTTCCTTCTTCTCATGGTTTTTATCAAAGTTCTATGATGCCACCTTTGCCAAATCAGAATGTTTCTTCTGGTTTGGATGGAAGTTTTTCAATGGGAGTTAATAGGTTGCAGCAGGTGAAGAATCATGGTGGAAACAATTCAAATCTTATTAGACATAGTAGTTCACCAGCTGGATTATTTTCTCAAATTAACATTGAAAATGGTTATGTTAGTATGAGAGGAATGGGAACTTTAGGAGCTGTTAATAACTCAATGAAAGAAGCAAAGTTTTCTACTGCAAGGAGTTTGAAAAATCAATCAAACTATTCATCAGGGTTAATGTCAACAATAGATGAAGTTGGTGACAAAGACAATAGAGAAAATAATCTAGAAAATGAGGCTTTTGGTGAAAGTCATGGTAACGAATATATGGATTATCCGGTTGATACTTGGGATGATTCTGAAATGATGTCTGAAAATGTTGGTGGTTTAAAAAGATTTAGAGATAATGATTCAAAACAACAATTTTCTGGTTTAAATGTTCAGAATGAAACAGGAGGAGGACATTCTAATTCTCCTTTGGCTCATCAATTGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATGGAGAAGTTTCTGCATTTCTCAGATTCTGTTCCGATGAAAATTCGCGCCAAGCGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGGACTAAAATTAGTGAGCGTATGAGGAAGCTACAAGATCTGGTCCCAAACATGGATAAGCAAACAAACACAGCAGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGCTCAGAAGCTTCAAGATTGTCAAGCAAAGTGTACGTGCCCACACAAGCAGCAGCAACAACAATAA 1239 0.3656 MESDLHQQQQPQVNSSGLTRFKSAPSSYFNNIIDREFYEHVFNKPSSPETERVFSRFINSFGSDDDLLAQKISVDSTVKEEEEVNINQQQQQQDQGLASINNEHVVHQQSNYNNSVPSSHGFYQSSMMPPLPNQNVSSGLDGSFSMGVNRLQQVKNHGGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGTLGAVNNSMKEAKFSTARSLKNQSNYSSGLMSTIDEVGDKDNRENNLENEAFGESHGNEYMDYPVDTWDDSEMMSENVGGLKRFRDNDSKQQFSGLNVQNETGGGHSNSPLAHQLSMPNTSSEMAAMEKFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQKLQDCQAKCTCPHKQQQQQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3408 412 CDD bHLH_AtbHLH_like 343 396 IPR045239 -
Mtr2g3408 412 MobiDBLite consensus disorder prediction 1 20 - -
Mtr2g3408 412 Gene3D - 339 411 IPR036638 GO:0046983
Mtr2g3408 412 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 408 - -
Mtr2g3408 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 402 IPR036638 GO:0046983
Mtr2g3408 412 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 6 408 - -
Mtr2g3408 412 MobiDBLite consensus disorder prediction 111 144 - -
Mtr2g3408 412 Pfam Helix-loop-helix DNA-binding domain 343 389 IPR011598 GO:0046983
Mtr2g3408 412 SMART finulus 344 394 IPR011598 GO:0046983
Mtr2g3408 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3408 Mtr-Chr2 48128537 48132137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3408 6 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.512 2.57e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g3408 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3408 - - gmx:100805812 499.975