Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr2g3391 | ATGGCAACAACGTATCACCAACCAGCATCCCTAGAAGAAGTTCGAACCCTATGGATAGGCGATTTACAATACTGGGTAGACGAAAACTATCTCACACACTGTTTCTCCCACACCGGCGAAGTCATCTCCATCAAAATCATCCGCAACAAAATCACCGGCCAACCCGAAGGTTACGGTTTCATCGAATTCGTCTCCCACTCCGCCGCCGAACGCGTTCTTCAAACCTACAACGGCACTCAAATGCCTGGCACCGAACAAACCTTCCGTTTAAACTGGGCTTCATTCGGTATCGGTGAACGCCGTCCTGATGCTGGTCCCGATCATTCGATATTTGTGGGGGATTTGGCGCCTGATGTTACGGATTATTTACTGCAAGAGACTTTTAGGACTCATTATGGGAGTGTTCGTGGGGCGAAGGTTGTGACTGATCCGAATACTGGGAGGAGTAAGGGGTATGGGTTTGTTAAATTTAGTGATGAGAGTGAGAGGAATCGTGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGACCGATGAGGATTAGTGCTGCTACCCCCAAGAAAACTACGGGGTATCAGCAGAATCCTTATGCTGCTGTTGTTGCTGCTGCTCCTGTTCCCAAAGCAATATATCCAGTGCCGGCATACACCACCGCCCCAGTGAATACAGTTCCACCAGAATACGATGTAAACAATACTACTATTTATGTTGGTAATTTGGATCTTAATGTCTCAGAAGAGGAGCTGAAGCAAAACTTTTTGCAATTTGGAGAGATTGTTTCTGTCAAAGTTCATCCCGGCAAAGCATGTGGTTTTGTTCAATTTGGTGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATATTAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGCCCCAAACAGCTAGACAGGACGTACCTGGTGGCTGGGGACAACAGGTGGATCAAAGTCAATGGAGTGCATACTATGGGTATGGACAGCCGGGTTATGAAGCTTATGCATATGGGGCTGCTCAGGATCCTTCAATGTATGCATATGCTGGATATGCTAGCTATGCACAATACCCGCAACAGGTTGAAGGTGCCCAAGACGTATCAGCTATGTCTGTGCCTACCTTGGAACAAAGGGAAGAATTGTATGATCCTCTGGCAATGCCCGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAATGCCATTTTAGGGCGGTCCCTCTGGCACAAAACCCATTCCTCATCCTTGCAGCAGCAAGCTTAG | 1287 | 0.4693 | MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYASYAQYPQQVEGAQDVSAMSVPTLEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKTHSSSLQQQA* | 429 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr2g3391 | 428 | CDD | RRM2_SECp43_like | 107 | 186 | - | - | |
Mtr2g3391 | 428 | SUPERFAMILY | RNA-binding domain, RBD | 100 | 198 | IPR035979 | GO:0003676 | |
Mtr2g3391 | 428 | Gene3D | - | 220 | 314 | IPR012677 | - | |
Mtr2g3391 | 428 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED | 6 | 365 | - | - | |
Mtr2g3391 | 428 | Gene3D | - | 14 | 94 | IPR012677 | - | |
Mtr2g3391 | 428 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 108 | 187 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 15 | 95 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | Gene3D | - | 97 | 199 | IPR012677 | - | |
Mtr2g3391 | 428 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 234 | 306 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 17 | 85 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 236 | 300 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 110 | 175 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 83 | IPR035979 | GO:0003676 | |
Mtr2g3391 | 428 | CDD | RRM1_SECp43_like | 16 | 96 | - | - | |
Mtr2g3391 | 428 | SUPERFAMILY | RNA-binding domain, RBD | 219 | 334 | IPR035979 | GO:0003676 | |
Mtr2g3391 | 428 | SMART | rrm1_1 | 109 | 183 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | SMART | rrm1_1 | 235 | 302 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | SMART | rrm1_1 | 16 | 91 | IPR000504 | GO:0003723 | |
Mtr2g3391 | 428 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 6 | 365 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr2g3391 | Mtr-Chr2 | 47955114 | 47960798 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr2g3391 | 16 | 312 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 26.821 | 4.01e-26 | 109 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr2g3391 | - | - | cam:101496574 | 782.326 |