LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr2g3391	ATGGCAACAACGTATCACCAACCAGCATCCCTAGAAGAAGTTCGAACCCTATGGATAGGCGATTTACAATACTGGGTAGACGAAAACTATCTCACACACTGTTTCTCCCACACCGGCGAAGTCATCTCCATCAAAATCATCCGCAACAAAATCACCGGCCAACCCGAAGGTTACGGTTTCATCGAATTCGTCTCCCACTCCGCCGCCGAACGCGTTCTTCAAACCTACAACGGCACTCAAATGCCTGGCACCGAACAAACCTTCCGTTTAAACTGGGCTTCATTCGGTATCGGTGAACGCCGTCCTGATGCTGGTCCCGATCATTCGATATTTGTGGGGGATTTGGCGCCTGATGTTACGGATTATTTACTGCAAGAGACTTTTAGGACTCATTATGGGAGTGTTCGTGGGGCGAAGGTTGTGACTGATCCGAATACTGGGAGGAGTAAGGGGTATGGGTTTGTTAAATTTAGTGATGAGAGTGAGAGGAATCGTGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGACCGATGAGGATTAGTGCTGCTACCCCCAAGAAAACTACGGGGTATCAGCAGAATCCTTATGCTGCTGTTGTTGCTGCTGCTCCTGTTCCCAAAGCAATATATCCAGTGCCGGCATACACCACCGCCCCAGTGAATACAGTTCCACCAGAATACGATGTAAACAATACTACTATTTATGTTGGTAATTTGGATCTTAATGTCTCAGAAGAGGAGCTGAAGCAAAACTTTTTGCAATTTGGAGAGATTGTTTCTGTCAAAGTTCATCCCGGCAAAGCATGTGGTTTTGTTCAATTTGGTGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATATTAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGCCCCAAACAGCTAGACAGGACGTACCTGGTGGCTGGGGACAACAGGTGGATCAAAGTCAATGGAGTGCATACTATGGGTATGGACAGCCGGGTTATGAAGCTTATGCATATGGGGCTGCTCAGGATCCTTCAATGTATGCATATGCTGGATATGCTAGCTATGCACAATACCCGCAACAGGTTGAAGGTGCCCAAGACGTATCAGCTATGTCTGTGCCTACCTTGGAACAAAGGGAAGAATTGTATGATCCTCTGGCAATGCCCGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAATGCCATTTTAGGGCGGTCCCTCTGGCACAAAACCCATTCCTCATCCTTGCAGCAGCAAGCTTAG	1287	0.4693	MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYASYAQYPQQVEGAQDVSAMSVPTLEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKTHSSSLQQQA*	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr2g3391	428	CDD	RRM2_SECp43_like	107	186	-	-
	Mtr2g3391	428	SUPERFAMILY	RNA-binding domain, RBD	100	198	IPR035979	GO:0003676
	Mtr2g3391	428	Gene3D	-	220	314	IPR012677	-
	Mtr2g3391	428	PANTHER	POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED	6	365	-	-
	Mtr2g3391	428	Gene3D	-	14	94	IPR012677	-
	Mtr2g3391	428	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	108	187	IPR000504	GO:0003723
	Mtr2g3391	428	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	15	95	IPR000504	GO:0003723
	Mtr2g3391	428	Gene3D	-	97	199	IPR012677	-
	Mtr2g3391	428	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	234	306	IPR000504	GO:0003723
	Mtr2g3391	428	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	17	85	IPR000504	GO:0003723
	Mtr2g3391	428	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	236	300	IPR000504	GO:0003723
	Mtr2g3391	428	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	110	175	IPR000504	GO:0003723
	Mtr2g3391	428	SUPERFAMILY	RNA-binding domain, RBD	6	83	IPR035979	GO:0003676
	Mtr2g3391	428	CDD	RRM1_SECp43_like	16	96	-	-
	Mtr2g3391	428	SUPERFAMILY	RNA-binding domain, RBD	219	334	IPR035979	GO:0003676
	Mtr2g3391	428	SMART	rrm1_1	109	183	IPR000504	GO:0003723
	Mtr2g3391	428	SMART	rrm1_1	235	302	IPR000504	GO:0003723
	Mtr2g3391	428	SMART	rrm1_1	16	91	IPR000504	GO:0003723
	Mtr2g3391	428	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	6	365	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr2g3391	Mtr-Chr2	47955114	47960798	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr2g3391	16	312	Eukaryotic Initiation Factors Gene Family	AT1G22760	26.821	4.01e-26	109

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr2g3391	-		-	cam:101496574	782.326