Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3391 ATGGCAACAACGTATCACCAACCAGCATCCCTAGAAGAAGTTCGAACCCTATGGATAGGCGATTTACAATACTGGGTAGACGAAAACTATCTCACACACTGTTTCTCCCACACCGGCGAAGTCATCTCCATCAAAATCATCCGCAACAAAATCACCGGCCAACCCGAAGGTTACGGTTTCATCGAATTCGTCTCCCACTCCGCCGCCGAACGCGTTCTTCAAACCTACAACGGCACTCAAATGCCTGGCACCGAACAAACCTTCCGTTTAAACTGGGCTTCATTCGGTATCGGTGAACGCCGTCCTGATGCTGGTCCCGATCATTCGATATTTGTGGGGGATTTGGCGCCTGATGTTACGGATTATTTACTGCAAGAGACTTTTAGGACTCATTATGGGAGTGTTCGTGGGGCGAAGGTTGTGACTGATCCGAATACTGGGAGGAGTAAGGGGTATGGGTTTGTTAAATTTAGTGATGAGAGTGAGAGGAATCGTGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGACCGATGAGGATTAGTGCTGCTACCCCCAAGAAAACTACGGGGTATCAGCAGAATCCTTATGCTGCTGTTGTTGCTGCTGCTCCTGTTCCCAAAGCAATATATCCAGTGCCGGCATACACCACCGCCCCAGTGAATACAGTTCCACCAGAATACGATGTAAACAATACTACTATTTATGTTGGTAATTTGGATCTTAATGTCTCAGAAGAGGAGCTGAAGCAAAACTTTTTGCAATTTGGAGAGATTGTTTCTGTCAAAGTTCATCCCGGCAAAGCATGTGGTTTTGTTCAATTTGGTGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATATTAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGCCCCAAACAGCTAGACAGGACGTACCTGGTGGCTGGGGACAACAGGTGGATCAAAGTCAATGGAGTGCATACTATGGGTATGGACAGCCGGGTTATGAAGCTTATGCATATGGGGCTGCTCAGGATCCTTCAATGTATGCATATGCTGGATATGCTAGCTATGCACAATACCCGCAACAGGTTGAAGGTGCCCAAGACGTATCAGCTATGTCTGTGCCTACCTTGGAACAAAGGGAAGAATTGTATGATCCTCTGGCAATGCCCGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAATGCCATTTTAGGGCGGTCCCTCTGGCACAAAACCCATTCCTCATCCTTGCAGCAGCAAGCTTAG 1287 0.4693 MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYASYAQYPQQVEGAQDVSAMSVPTLEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKTHSSSLQQQA* 429
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3391 428 CDD RRM2_SECp43_like 107 186 - -
Mtr2g3391 428 SUPERFAMILY RNA-binding domain, RBD 100 198 IPR035979 GO:0003676
Mtr2g3391 428 Gene3D - 220 314 IPR012677 -
Mtr2g3391 428 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 6 365 - -
Mtr2g3391 428 Gene3D - 14 94 IPR012677 -
Mtr2g3391 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 187 IPR000504 GO:0003723
Mtr2g3391 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Mtr2g3391 428 Gene3D - 97 199 IPR012677 -
Mtr2g3391 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 306 IPR000504 GO:0003723
Mtr2g3391 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Mtr2g3391 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 300 IPR000504 GO:0003723
Mtr2g3391 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Mtr2g3391 428 SUPERFAMILY RNA-binding domain, RBD 6 83 IPR035979 GO:0003676
Mtr2g3391 428 CDD RRM1_SECp43_like 16 96 - -
Mtr2g3391 428 SUPERFAMILY RNA-binding domain, RBD 219 334 IPR035979 GO:0003676
Mtr2g3391 428 SMART rrm1_1 109 183 IPR000504 GO:0003723
Mtr2g3391 428 SMART rrm1_1 235 302 IPR000504 GO:0003723
Mtr2g3391 428 SMART rrm1_1 16 91 IPR000504 GO:0003723
Mtr2g3391 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 365 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr2g3391 Mtr-Chr2 47955114 47960798 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3391 16 312 Eukaryotic Initiation Factors Gene Family AT1G22760 26.821 4.01e-26 109
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3391 - - cam:101496574 782.326