Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3373 ATGAACTCGGAAACTGAAACACCATCCTCAACGACGTCGTTTTGGTGCTACAGCTGCACACGTTTCATTCACATCTTGAACCAAAACAACGTTGTTTGTCCTCACTGCCAAAACGGCTTCGTTGAAGAGATTCACGCCGGTCAATCACCGGCGGTTTCTCTTTTCGCCGACGGAATTCAGTCCTCCAGAAGACAAACCTCCCGCCGCAGACGTCGTAACGCCGGCGGCAGCCGTTCGCCTTTTAATCCGGTGATCGTTCTCCGTGGACCTAGAGAAGACACCACCGCCGGTGTCGGTGCAGACGCCGGCGGGGGTGATAGCGAGGGGAATACAAGTAGTTTTGAATTATACTATGAAGACAGTAATGGCACCGATCTACGTCCACTTCCACCAAGCATGTCGGAGCTATTACTCGGTTCCGGCTTCGATCGGTTGTTAGAGCAATTCTCTCAAATTGAAATCAACGGTTTCGGAAGGTCGGAGAATCCACCGGCGTCAAAGGCGGCGATAGAGTCAATACCAACAGTTGAAATCACCGATTCAGAAATGGAATCCGAAATTCACTGTGCAGTTTGCAAAGAACAATTCGAGCTAGGTTCTGAAGCGCGTAAGATGCCGTGTAATCATCTTTACCATTCCGATTGCATTCTCCCATGGCTTTCAATGCGAAATTCGTGCCCGGTGTGTCGGCACGAGTTACCGTCCGATCAAAACGCGTCGGAGAGTAGAATTTCCGGTCAGATTGATGAAGAAGCGGTTGGATTGACAATATGGAGGTTACCGGGAGGTGGATTTGCTGTTGGAAGATTTGCCGGTGGGCGGAGAGCCGGTGAGATTCAGTTACCGATTGTTTACACGGAGATGGATGGTAACAATTCAAACGAAGATTCTAGAAGAATTTCTTTGACTGTGGGAAGTAATAGAGTTAGAGAGAGACGTGGAATTAGGAGAATTTTTCGAAATTTTTTGTCGTTTTTTGGGAATGTTAATTTAAATCGTAGCTTTTCTGGTTCGTTGTTTCGTAGAAGCTCAAGAAGAAGAAGCAGAACTTGGGTTACAGAAGAATAA 1068 0.4728 MNSETETPSSTTSFWCYSCTRFIHILNQNNVVCPHCQNGFVEEIHAGQSPAVSLFADGIQSSRRQTSRRRRRNAGGSRSPFNPVIVLRGPREDTTAGVGADAGGGDSEGNTSSFELYYEDSNGTDLRPLPPSMSELLLGSGFDRLLEQFSQIEINGFGRSENPPASKAAIESIPTVEITDSEMESEIHCAVCKEQFELGSEARKMPCNHLYHSDCILPWLSMRNSCPVCRHELPSDQNASESRISGQIDEEAVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPIVYTEMDGNNSNEDSRRISLTVGSNRVRERRGIRRIFRNFLSFFGNVNLNRSFSGSLFRRSSRRRSRTWVTEE* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3373 355 CDD RING-H2_RNF126_like 189 230 - -
Mtr2g3373 355 Pfam Ring finger domain 188 230 IPR001841 -
Mtr2g3373 355 PANTHER OS05G0110000 PROTEIN 9 313 - -
Mtr2g3373 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 313 - -
Mtr2g3373 355 MobiDBLite consensus disorder prediction 56 115 - -
Mtr2g3373 355 Pfam zinc-ribbon 12 44 IPR039525 GO:0061630
Mtr2g3373 355 SMART ring_2 189 229 IPR001841 -
Mtr2g3373 355 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Mtr2g3373 355 Pfam Protein of unknown function (DUF1117) 253 345 IPR010543 -
Mtr2g3373 355 SUPERFAMILY RING/U-box 169 236 - -
Mtr2g3373 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3373 Mtr-Chr2 47804517 47806137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3373 125 241 C3H Transcription Factor Family AT5G01980 42.735 1.44e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3373 - - aip:107612938 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3373 2 47804517 47806137 Mtr2g3373 2 47804517 47806137 ECH
Mtr2g3373 2 47804517 47806137 Mtr4g1904 4 32234936 32236626 ECH
Mtr7g1436 7 29114177 29116280 Mtr2g3373 2 47804517 47806137 ECH
Mtr2g3373 2 47804517 47806137 Mtr4g1904 4 32234936 32236626 PCT