Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3351 ATGTACAAAAAATCAGAACAGGCTCGTGAATCAGATTTGGAGTACTACAAGCGTAGATATTTTAAAGACCTGAAGGATGATTACTACAAGGACAAGCTCAAAATCTCTGATTCCACGTATCGCTGTCCATTTTGCGACAACAAGGACTACTACTCTTTGAGTGAGCTATTGAGACATGCATCCAGAATTGTGGGTGACTCAGGTGAGGCAGTTAAAGATGTTGCTAAGCATTCAGCTCTTGAAATGTATATTGAAAGCTATGGTGATGTTATAGTTGGAAAAGATAACTTAACTGCTATTATTAGTATTGATAATGATAAGACCGCTGTTGGCAGTGTTAGTGATAAGTCGGTTAATTTGAGTATCGCTAATGAGAAGTCACTTATTATGAATGATGCTGAGGGTCATTTGGGTAATGTGAATGTTGAGGATGATGAGTTGTTTGTTTGGCCATGGATGGTGATTTTGAAAAATATTGTTACTCATATTGACCCAAAAAGCGGAAAGTATGTTGGGAAGAATCATAAAAAAATTAAGGAAGAGCTGATCATGAACGGCTTTCACCCATTGAAAGTTACTGCCCTGTGGAACTTTAGAGGACAAACAGCCTTTGCAGTTGTTCAATTTGGAAGAGAGTGGGATGGTTTCCACAATGCTATGAAGTTAGAGAGGAGCTTTCAAGCAGAGCACTGTGGTAAGAGGGATTACTTGGCTTTACGGGAGCAGGAGCGGGGAGATAGACTCTTTGGGTGGATGGCACGTCGTGATGACTATAATTTCAATGATATAGTTGGCAAACACCTCCGGGAAAAAGGGGATTTGAAAACTGTTTCTGGGAAAGAAGCTGAGGACAATAGGAAAGCGAGGAAGCTTCTCTCTGGTTTGGCCAATACCTTAAAGCTGAAAACCGAGGAATTGGAGCAGACAGCAAGCAAGTATGATGAGGTGAATGTGTCCCTAAGGAAAGCGATGGATCAAAAGGAAAAGATGCTTGAACATTTCAATAAGGAGATCAGCAAGATGCGGCAGGTTGAACGAGAGTACCAGGAGAAAGTATCTAAGGATCATGAAAAAGCCAGGCTGGAACTGGAAGCTCGGAGGAACGAGCTTATTTCCCGTGAGAAGGATCTGCAGAAGCGTGAAGTAGATAATCACAATGAGAAAGCCAAGCTATATTTTGAGAAGCAACATAATGAGATGGCAATAGAGGAGCAACAAAAGGCTGATGAAAAAATGATGTACTTGGCAGAAGAACATAAGGCACACTTTTCATTTTCCTATTACCTACAGTTTTTAATTCAGTTGCATGTATATACTTAA 1320 0.4045 MYKKSEQARESDLEYYKRRYFKDLKDDYYKDKLKISDSTYRCPFCDNKDYYSLSELLRHASRIVGDSGEAVKDVAKHSALEMYIESYGDVIVGKDNLTAIISIDNDKTAVGSVSDKSVNLSIANEKSLIMNDAEGHLGNVNVEDDELFVWPWMVILKNIVTHIDPKSGKYVGKNHKKIKEELIMNGFHPLKVTALWNFRGQTAFAVVQFGREWDGFHNAMKLERSFQAEHCGKRDYLALREQERGDRLFGWMARRDDYNFNDIVGKHLREKGDLKTVSGKEAEDNRKARKLLSGLANTLKLKTEELEQTASKYDEVNVSLRKAMDQKEKMLEHFNKEISKMRQVEREYQEKVSKDHEKARLELEARRNELISREKDLQKREVDNHNEKAKLYFEKQHNEMAIEEQQKADEKMMYLAEEHKAHFSFSYYLQFLIQLHVYT* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3351 439 Coils Coil 353 388 - -
Mtr2g3351 439 Coils Coil 317 351 - -
Mtr2g3351 439 Pfam XS zinc finger domain 42 80 IPR005381 GO:0031047
Mtr2g3351 439 Gene3D XS domain 140 314 IPR038588 -
Mtr2g3351 439 CDD RRM_like_XS 148 258 IPR005380 GO:0031047
Mtr2g3351 439 PANTHER FACTOR OF DNA METHYLATION 4 4 421 - -
Mtr2g3351 439 Pfam XS domain 145 259 IPR005380 GO:0031047
Mtr2g3351 439 PANTHER RIBONUCLEASE P SUBUNIT P38 4 421 IPR045177 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3351 Mtr-Chr2 47589255 47593613 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g3351 XS 2.6e-35 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3351 - - mtr:MTR_4g046643 616.69