Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3326 ATGTCTCAACGAATCGGGACAAAGCTATTTGTCAGCAGATTATCGTTTTACACTACACAACAACAATTAGAGTCATTATTCTCGCCATTCGGAGTACTTACAGAAGCTACACTTATTACGGACCAAAATACTCAAAGGCCTAAAGGCTTTGGTTTTGTCTCGTATAAATCTGAAATTGAAGCTGAAAAGGCTCGGAAAGCGTTGAATGGAAGGATAGTTGATGGAAGGTTGATTTTCGTTGAACATGCAAAACCGAAGGACTCATCATGA 270 0.3926 MSQRIGTKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKALNGRIVDGRLIFVEHAKPKDSS* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3326 89 SUPERFAMILY RNA-binding domain, RBD 6 87 IPR035979 GO:0003676
Mtr2g3326 89 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mtr2g3326 89 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 83 - -
Mtr2g3326 89 Gene3D - 2 89 IPR012677 -
Mtr2g3326 89 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mtr2g3326 89 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 6 83 - -
Mtr2g3326 89 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3326 Mtr-Chr2 47345698 47348270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3326 11 86 Eukaryotic Initiation Factors Gene Family AT5G06000 40.789 1.55e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3326 K13195 - gmx:100781760 128.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3326 2 47345698 47348270 Mtr2g3326 2 47345698 47348270 ECH