Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3319 ATGGTTCAAGAAGAAGTACGAAAAGGACCATGGACAGAACAAGAAGACTTCAAATTGGTGTCATTTGTTGGATTATTTGGAGACAGAAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGTAGGTTAAGATGGGTTAATTACCTTCATCCTGGTCTCAAAAGAGGAAAGATGACACCTCATGAAGAACGCCTTGTCCTTGAGCTTCAATCCAAATGGGGAAATAGGTGGTCACGAATTGCTCGCAAGCTACCTGGACGAACGGATAATGAGATCAAGAATTACTGGAGAACTCACATGAGGAAGAAGGCTCAAGACAAAAAGAGAGGATCCATTCAATCAACAGAACACCATGTAATGAATTCACATGCTTCCAAAGAGGCAGGAGAAGAAAGTTTTTATGACACAGGAGGATCATCAACATCAACACAAGTTAAACTAGTAGGAGAAGAGCATGAAAAAGAAATTTCAATGGATGATATATGGAAAGATATTGATCTATCAGAAGAGAATAGTCTACAGAATGAAGAGTGCTGCAATATTAATAATAACATATCTTGTTTACCAAAGACTTCTTCATCATGGGAGTATAATTCCACAGACTCACTATGGGTGATGGGTGAAGAAAGTATGTTATTCCCTATGGCTCCTATGAGTGATGACCCTTATTTTTCTGGCTATGCTAATTACTAA 711 0.3826 MVQEEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQDKKRGSIQSTEHHVMNSHASKEAGEESFYDTGGSSTSTQVKLVGEEHEKEISMDDIWKDIDLSEENSLQNEECCNINNNISCLPKTSSSWEYNSTDSLWVMGEESMLFPMAPMSDDPYFSGYANY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3319 236 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Mtr2g3319 236 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Mtr2g3319 236 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Mtr2g3319 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Mtr2g3319 236 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Mtr2g3319 236 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Mtr2g3319 236 Gene3D - 63 136 - -
Mtr2g3319 236 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 221 - -
Mtr2g3319 236 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 221 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mtr2g3319 236 CDD SANT 63 106 IPR001005 -
Mtr2g3319 236 MobiDBLite consensus disorder prediction 113 136 - -
Mtr2g3319 236 CDD SANT 10 55 IPR001005 -
Mtr2g3319 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Mtr2g3319 236 Gene3D - 8 60 - -
Mtr2g3319 236 MobiDBLite consensus disorder prediction 109 147 - -
Mtr2g3319 236 SMART sant 7 57 IPR001005 -
Mtr2g3319 236 SMART sant 60 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3319 Mtr-Chr2 47279597 47281017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3319 1 212 MYB Transcription Factor Family AT5G59780 60.274 5.72e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr2g3319 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3319 K09422 - tcc:18590753 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3319 2 47279597 47281017 Mtr2g3319 2 47279597 47281017 ECH
Mtr4g1840 4 31494622 31496492 Mtr2g3319 2 47279597 47281017 PCT