Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3316 ATGGCTCCACCAAAAGGTGATGGTGCAAAGAAGACCGATCCAAAGGCACAGGCCTTGAAAGCTGCGAAAGCAGTGAAGTCAGGCACTGCCATCAAGAAAAAGGCAAAGAAGATCAGGACAACTGTTACATTCCACAGGCCAAAGACTTTATCTAGGGATAGGAATCCAAAATACCCTCGGATTAGTGCTACACCAAGGAACAAACTTGATCATTATCAGATTTTGAAGTATCCACTCACAACTGAGTCCGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGAGCTGACAAAAAGAAAATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCCGATGGCACCAAGAAGGCCTATGTAAGGTTGACACCTGATTATGATGCTTTGGATGTTGCAAACAAGATTGGGATTATTTAA 465 0.4258 MAPPKGDGAKKTDPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSRDRNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3316 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mtr2g3316 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Mtr2g3316 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mtr2g3316 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mtr2g3316 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Mtr2g3316 154 Gene3D - 35 154 IPR012677 -
Mtr2g3316 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Mtr2g3316 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Mtr2g3316 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3316 Mtr-Chr2 47259549 47261928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3316 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 5.31e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3316 K02893 - pvy:116105236 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3316 2 47259549 47261928 Mtr2g3316 2 47259549 47261928 ECH
Mtr2g3316 2 47259549 47261928 Mtr4g1836 4 31469584 31471991 ECH
Mtr2g3316 2 47259549 47261928 Mtr4g1836 4 31469584 31471991 PCT