Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3299 ATGGAGCGTTTGAAGAAATCACCATCATCTTCATCACAAAGACCATCATTTCCGAGGGACCCTCGAGGATCCCTCGAAGTATTCAATCCAACAAGCAACTCAACCTCACCGGTACGTTCTCCGTCACACCTGAAAACATGGACAGAAACGGAAGAACAGCACAAAGATTTCATTTCCACAGATGAAGTCACCAACACTTCATGGATGGCAATCAAGGAAGGAGAAACCGGTGCCGCGGCACAGAGAGCAGCTGAGTGGGGTTTGGTGCTCAGAACAGACGCTGAAACCGGGAAACCACAAGGAGTGGGAGTTAGAAACTCCGGTGACGATGAACAGAATGGCAAGTTCTCCGGCAAAAGGAATTCCAATAACTCCGGCAGAGTTTCCGGTGACTCTTCCGACGGTGGTGATCCTCGCGGGTTTCCGAGAGTTTCAGAGGATTTGAAAGATGCTTTATCAGCTTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCAATTATGTATGCAAGTGCAGGTTTCTTCAACATGACGGGTTATACTTCAAAAGAAGTCATAGGAAGAAACTGTCGGTTTTTACAAGGCGCGGATACTGATCCGCAAGACGTGGCAAAGATAAGGGAAGCATTAGAAGGTGGGAAAAGTTATTGTGGAAGGTTACTGAATTACAAGAAGGATGGAACTCCCTTCTGGAATCTTCTCACTATTTCACCCATCAAGGATGATGATGGCAATGTGCTCAAGTTAATTGGAATGTTGGTGGAAGTTAACAAGCATACGGAAGGGTCCAAGGAGAAGAATTTACGTCCCAATGGGTTGCCTGAATCCTTGATTCGATATGATGCTCGTCAAAAAGAGAAGGCTTCATCTTCTGTTTCTGAGTTGCTACAAGCCATGAAGCGTCCCCGTGCATTGAGTGAATCTGGACAGCGTCCCTTTATCATAAAATCAGGAGGATGTTCTGAGGAAGATCAAGAGATAGAGAAAGTAGAGCACAAATCAAGGAGAAAATCTGATAGTGTAGCTTCTTTTAGACCAAAATCACAAAGAAAAAGTAGAAGTTCAATGGAACGAATCAGTGAGCTACCTGAAAATGCAAACAAAAACTCTCATCGCCATTCTTTCATGGGGTTCCGGAGGAAAAGTCAGTCCATTGATGAAAGCATTGATAATGAAGTTATTGTAGATATGAGCTCTGAGAGTGAGGATGATGACAGGGATGATAGTTTTGAATTTGATGACAAAGAAAAGCTGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACTACACTTGAGCGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGACAATCCTATAATATTTGCATCTGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATATTGGGAAGAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAACCAAACCGAAGTTACAGTGCAACTGATCAATTATACAAGGACTGGGAAAAAGTTTTGGAATCTGTTTCACTTGCAACCTATGCGTGATCATAAGGGAGAAGTACAGTACTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATTAAAGAAGATACTGCAAAGGAGGGAGAACAATTGGTCAAACAAACTGCAGAAAATGTTGGTGAGGCAGTGAGAGAACTTCCAGACGCTAATCAGAAACCGGATGATTTATGGCTAAATCATTCAAAAGTGGTTCACCCGAAACCTCATAGGAAGGATAATGATGCTTGGAGAGCAATCCAAAAGATCATCGAAAATGGAGAACAGATAAGCCTAAAGCACTTTAGGCCAATTAAACCTTTGGGATCTGGAGATACCGGAAGTGTGCATCTGGTGGAGCTAGAAGGAACTGGTCAATACTTCGCAATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAAAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTGCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACCGATTACTATCCTGGTGGAGAACTATTCCTGCTTCTTGACCAGCAGCCAACTAAGGTTCTCAAGGAAGATGCTGTGAGATTTTATGCTGCTGAGGTATTGATTGCATTGGAGTACCTTCATTGTCAAGGCATAATTTATCGAGATTTGAAGCCAGAAAATGTGTTGATCCAGAGAAATGGGCATGTGTCTTTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTATAATTCCAGCTAATGAGGATAAAAAGAAAAGGAAGAAGAAAAAGAAAAAGGGACAACAGAAAACTCAACAAATTCCAACGTTTATGGCGGAACCAATGAGAGCGTCCAATTCTTTTGTTGGTACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCTGTGGATTGGTGGGCTTTAGGTATTCTTCTATATGAAATGCTTTATGGATACACACCATTCAGGGGAAAGACAAGACAAAAGACATTTGCAAACATTCTTCACAAAGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCCCCAGGCAAAGCAGCTAATTTACTGGTTGTTGCACAGAGATCCCAAAAACAGATTAGGTTCACTTGAAGGCGCAAATGAAATTAAGAGCCATCCGTTCTTCAAGAATGTCAATTGGGCTCTAATTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTATCTTACTGGAAAATGATGAAAAGAAAGAAGCCAAAGATATTGACCCTGGTCTAGATGATTTACAGAAAAATATTTTCTAA 2907 0.4155 MERLKKSPSSSSQRPSFPRDPRGSLEVFNPTSNSTSPVRSPSHLKTWTETEEQHKDFISTDEVTNTSWMAIKEGETGAAAQRAAEWGLVLRTDAETGKPQGVGVRNSGDDEQNGKFSGKRNSNNSGRVSGDSSDGGDPRGFPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFLQGADTDPQDVAKIREALEGGKSYCGRLLNYKKDGTPFWNLLTISPIKDDDGNVLKLIGMLVEVNKHTEGSKEKNLRPNGLPESLIRYDARQKEKASSSVSELLQAMKRPRALSESGQRPFIIKSGGCSEEDQEIEKVEHKSRRKSDSVASFRPKSQRKSRSSMERISELPENANKNSHRHSFMGFRRKSQSIDESIDNEVIVDMSSESEDDDRDDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIKEDTAKEGEQLVKQTAENVGEAVRELPDANQKPDDLWLNHSKVVHPKPHRKDNDAWRAIQKIIENGEQISLKHFRPIKPLGSGDTGSVHLVELEGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDAVRFYAAEVLIALEYLHCQGIIYRDLKPENVLIQRNGHVSLTDFDLSCLTSCKPQLIIPANEDKKKRKKKKKKGQQKTQQIPTFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPQAKQLIYWLLHRDPKNRLGSLEGANEIKSHPFFKNVNWALIRCMKPPELDAPILLENDEKKEAKDIDPGLDDLQKNIF* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3299 968 SMART pas_2 146 215 IPR000014 -
Mtr2g3299 968 SMART pas_2 429 498 IPR000014 -
Mtr2g3299 968 CDD PAS 442 542 IPR000014 -
Mtr2g3299 968 MobiDBLite consensus disorder prediction 45 59 - -
Mtr2g3299 968 PANTHER PHOTOTROPIN-1 96 968 - -
Mtr2g3299 968 ProSitePatterns Protein kinases ATP-binding region signature. 634 657 IPR017441 GO:0005524
Mtr2g3299 968 ProSiteProfiles PAC domain profile. 218 272 IPR000700 -
Mtr2g3299 968 TIGRFAM sensory_box: PAS domain S-box protein 171 264 IPR000014 -
Mtr2g3299 968 TIGRFAM sensory_box: PAS domain S-box protein 452 542 IPR000014 -
Mtr2g3299 968 SUPERFAMILY PYP-like sensor domain (PAS domain) 443 542 IPR035965 -
Mtr2g3299 968 ProSiteProfiles PAS repeat profile. 427 500 IPR000014 -
Mtr2g3299 968 SMART pac_2 221 263 IPR001610 -
Mtr2g3299 968 SMART pac_2 504 546 IPR001610 -
Mtr2g3299 968 MobiDBLite consensus disorder prediction 106 131 - -
Mtr2g3299 968 SUPERFAMILY Protein kinase-like (PK-like) 611 940 IPR011009 -
Mtr2g3299 968 SMART serkin_6 628 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g3299 968 ProSiteProfiles PAS repeat profile. 144 215 IPR000014 -
Mtr2g3299 968 Gene3D Phosphorylase Kinase; domain 1 627 711 - -
Mtr2g3299 968 PANTHER FLIPPASE KINASE 1-RELATED 96 968 - -
Mtr2g3299 968 ProSiteProfiles PAC domain profile. 501 555 IPR000700 -
Mtr2g3299 968 MobiDBLite consensus disorder prediction 1 61 - -
Mtr2g3299 968 Pfam PAS domain 450 542 IPR000014 -
Mtr2g3299 968 Pfam PAS domain 165 260 IPR000014 -
Mtr2g3299 968 Gene3D PAS domain 416 580 - -
Mtr2g3299 968 Gene3D PAS domain 158 313 - -
Mtr2g3299 968 CDD STKc_phototropin_like 626 942 - -
Mtr2g3299 968 Pfam Protein kinase domain 630 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g3299 968 MobiDBLite consensus disorder prediction 26 44 - -
Mtr2g3299 968 Gene3D Transferase(Phosphotransferase) domain 1 712 936 - -
Mtr2g3299 968 MobiDBLite consensus disorder prediction 94 144 - -
Mtr2g3299 968 MobiDBLite consensus disorder prediction 306 386 - -
Mtr2g3299 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Mtr2g3299 968 MobiDBLite consensus disorder prediction 325 372 - -
Mtr2g3299 968 ProSiteProfiles Protein kinase domain profile. 628 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g3299 968 SUPERFAMILY PYP-like sensor domain (PAS domain) 165 257 IPR035965 -
Mtr2g3299 968 CDD PAS 171 260 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3299 Mtr-Chr2 47058360 47071949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3299 8 968 AGC Kinase Gene Family AT3G45780 68.290 0.0 1323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Mtr2g3299 Pkinase 3.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3299 K20715 - gmx:100817565 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3299 2 47058360 47071949 Mtr2g3299 2 47058360 47071949 ECH
Mtr2g3299 2 47058360 47071949 Mtr4g1801 4 30999781 31013397 PCT