Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3283 ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCACCAGAAGAAGATACAAAGCTCAAAGAGTATATAGAAAAGCATGGAACTGGTGGAAATTGGATTTCTCTTCCTCAAAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGTCGATTGAGATGGCTTAACTATTTAAGGCCAAACATTAAGCATGGAGAATTTTCAGATGAAGAAGACAGAATCATTTGCACTCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAATTACCAGGAAGAACTGATAATGATATCAAAAACTACTGGAACACAAAACTAAAGAAGAAACTCATGAATCTTCTTCCTCAATCTCATAACACAGTTTTACCATATCTAACCTCTTCTTCATTTCCTTCTCATTGCACCTCCTATTTCAACCAAACACCAACAAACACATCTTTCACAACATCCCTTGAACAACAATTTTCTGTTCCTTCATCAAGTAGCTCAATCTCTCTCCCTTTTTACCATAACCAAGAGTCTTTACTCAATGGTTTTAGTAGTAATACTAATACTAATATTTCCATGCAATATCAACTTCAAAACCCTATGATGAAAGAAAGTCTTGTCATGTTTGGAAGTGAGGGAAGTTGTTGCAGTTCATCTGATGGAAGTCTTGGGAAACAAGAAGAAATAATGGGGTTTCAGAATTTCATGCAAATCAACAAGTTCAATCTTAGTCATGGAAGTGATGTTGTTGATGTTAATAACCAATGGGAAAGAGAAAAGGTGAATTTATGCTTTAGTCAAAATCATGAAAAGCAAATTACTAGTACGACACCTTTGGATTATGATCTTGAGTATATTAAGCAATTAATTAGTAGTAATAGTGGTAGTTGTAATAATGGTTACTTGAGTATTGATGAAAATAAGATGGAGGAGAAGACTATGTACTATTACTGA 963 0.3499 MGRAPCCDKANVKKGPWSPEEDTKLKEYIEKHGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMNLLPQSHNTVLPYLTSSSFPSHCTSYFNQTPTNTSFTTSLEQQFSVPSSSSSISLPFYHNQESLLNGFSSNTNTNISMQYQLQNPMMKESLVMFGSEGSCCSSSDGSLGKQEEIMGFQNFMQINKFNLSHGSDVVDVNNQWEREKVNLCFSQNHEKQITSTTPLDYDLEYIKQLISSNSGSCNNGYLSIDENKMEEKTMYYY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3283 320 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr2g3283 320 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mtr2g3283 320 Gene3D - 7 68 - -
Mtr2g3283 320 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mtr2g3283 320 CDD SANT 16 62 IPR001005 -
Mtr2g3283 320 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr2g3283 320 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr2g3283 320 SMART sant 13 64 IPR001005 -
Mtr2g3283 320 SMART sant 67 115 IPR001005 -
Mtr2g3283 320 PANTHER TRANSCRIPTION FACTOR RAX3 1 300 - -
Mtr2g3283 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mtr2g3283 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr2g3283 320 CDD SANT 70 111 IPR001005 -
Mtr2g3283 320 PANTHER OS09G0431300 PROTEIN 1 300 - -
Mtr2g3283 320 Gene3D - 69 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3283 Mtr-Chr2 46924332 46925976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3283 1 118 MYB Transcription Factor Family AT5G57620 88.136 4.14e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr2g3283 Myb_DNA-binding 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3283 K09422 - gmx:100796382 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3283 2 46924332 46925976 Mtr2g3283 2 46924332 46925976 ECH
Mtr2g3283 2 46924332 46925976 Mtr4g1677 4 29267689 29269746 PCT